RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 CDH22Q9UJ99 828 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 C15orf38-AP3S2A0A0A6YYH1 394 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 DENRO43583 198 aaKnown RBP20.47■□□□□ 0.87
SDF4-205ENST00000465727 IL1R2P27930 398 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 L1CAMP32004 1257 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 ACOT2P49753 483 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 SERPINB9P50453 376 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 YWHAZP63104 245 aaKnown RBP20.47■□□□□ 0.87
SDF4-205ENST00000465727 TRIP10Q15642 601 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 HSP90AA5PQ58FG0 334 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 ARPINQ7Z6K5 226 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 RTKN2Q8IZC4 609 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 SPATA18Q8TC71 538 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 CLEC4DQ8WXI8 215 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 ATP6V0A1Q93050 837 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 FAF2Q96CS3 445 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 CMTM5Q96DZ9 223 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 ZFRQ96KR1 1074 aaKnown RBP20.47■□□□□ 0.87
SDF4-205ENST00000465727 AGBL1Q96MI9 1066 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 C20orf27Q9GZN8 174 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 RSAD1Q9HA92 442 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 PAK5Q9P286 719 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 PCDHA10Q9Y5I2 948 aa20.47■□□□□ 0.87
SDF4-205ENST00000465727 SF3B1O75533 1304 aaKnown RBP eCLIP20.46■□□□□ 0.871e-7■■■■■ 105.8
SDF4-205ENST00000465727 POLRMTO00411 1230 aaKnown RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 NFIBO00712 420 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 FAM189A1O60320 539 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 PIGRP01833 764 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 SPATA31D3P0C874 917 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 FAM200BP0CF97 657 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 KRT3P12035 628 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 ACAT1P24752 427 aaKnown RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 PTGER2P43116 358 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 NOMO1Q15155 1222 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 CC2D2BQ6DHV5 1058 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 GPAT2Q6NUI2 795 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 KLC3Q6P597 504 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 SPATA31D4Q6ZUB0 917 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 KCTD6Q8NC69 237 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 CMASQ8NFW8 434 aaPredicted RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 SMYD3Q9H7B4 428 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 TDRD3Q9H7E2 651 aaKnown RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 NRDE2Q9H7Z3 1164 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 ZNF395Q9H8N7 513 aaPredicted RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 DBNDD1Q9H9R9 158 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 POPDC2Q9HBU9 364 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 CLIC5Q9NZA1 410 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 ZNF646O15015 1829 aaPredicted RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 CYB561D2O14569 222 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 SMIM18P0DKX4 95 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 RFC1P35251 1148 aaPredicted RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 AP3M2P53677 418 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 SOX10P56693 466 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 FOLH1Q04609 750 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 KCNT1Q5JUK3 1230 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 OGFRL1Q5TC84 451 aaPredicted RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 ARFGAP1Q8N6T3 406 aa20.46■□□□□ 0.87
SDF4-205ENST00000465727 NMD3Q96D46 503 aaKnown RBP20.46■□□□□ 0.87
SDF4-205ENST00000465727 ZNF541Q9H0D2 1346 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 APOEP02649 317 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 CNTFP26441 200 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 SERPINB6P35237 376 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 USP46P62068 366 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 TTLL12Q14166 644 aaPredicted RBP20.45■□□□□ 0.86
SDF4-205ENST00000465727 ACAP1Q15027 740 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 PGM5Q15124 567 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 DARS2Q6PI48 645 aaKnown RBP20.45■□□□□ 0.86
SDF4-205ENST00000465727 TIFABQ6ZNK6 161 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 NDUFAF2Q8N183 169 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 WDTC1Q8N5D0 677 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 PPP1R14CQ8TAE6 165 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 MAML3Q96JK9 1138 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 CYP26B1Q9NR63 512 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 FBXO28Q9NVF7 368 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 C6orf203Q9P0P8 240 aaPredicted RBP20.45■□□□□ 0.86
SDF4-205ENST00000465727 POMPQ9Y244 141 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 ANKRD31Q8N7Z5 1873 aa20.45■□□□□ 0.86
SDF4-205ENST00000465727 CXorf49A8MYA2 514 aaPredicted RBP20.44■□□□□ 0.86
SDF4-205ENST00000465727 CLPTM1O96005 669 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 ASS1P00966 412 aaKnown RBP20.44■□□□□ 0.86
SDF4-205ENST00000465727 RAG1P15918 1043 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 OSBPP22059 807 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 FDFT1P37268 417 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 EPHB1P54762 984 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 CNTN2Q02246 1040 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 CYP4A22Q5TCH4 519 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 KBTBD6Q86V97 674 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 TMEM126BQ8IUX1 230 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 SYTL5Q8TDW5 730 aaPredicted RBP20.44■□□□□ 0.86
SDF4-205ENST00000465727 TIMMDC1Q9NPL8 285 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 XPNPEP1Q9NQW7 623 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 DNAJC28Q9NX36 388 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 SIP14410 1827 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 TXNDC9O14530 226 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 SIN3BO75182 1162 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 PROCP04070 461 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 SNAPC2Q13487 334 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 FAM47CQ5HY64 1035 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 RALGPS1Q5JS13 557 aa20.44■□□□□ 0.86
SDF4-205ENST00000465727 SAMD1Q6SPF0 538 aaPredicted RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms