RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 C11orf57Q6ZUT1 292 aaPredicted RBP13.71□□□□□ -0.21
COL28A1-206ENST00000465339 SCD5Q86SK9 330 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 ADGRG2Q8IZP9 1017 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 ZNF687Q8N1G0 1237 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 SLC35F5Q8WV83 523 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 LINC00597Q9H2U6 94 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 ECT2Q9H8V3 914 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 NMUR1Q9HB89 426 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.71□□□□□ -0.21
COL28A1-206ENST00000465339 FANCLQ9NW38 375 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 OSER1Q9NX31 292 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 SMPD4Q9NXE4 827 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 CFAP97Q9P2B7 532 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 DNMT3LQ9UJW3 386 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 NAGPAQ9UK23 515 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 WNT6Q9Y6F9 365 aa13.71□□□□□ -0.21
COL28A1-206ENST00000465339 NFATC1O95644 943 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 ARSAP15289 507 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 BRD2P25440 801 aaKnown RBP13.7□□□□□ -0.22
COL28A1-206ENST00000465339 SOX9P48436 509 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 TYRO3Q06418 890 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 GOLGA8FQ08AF8 430 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 GOLGA8DPQ0D2H9 430 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 LRRC32Q14392 662 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 MEA1Q16626 185 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 ARHGAP44Q17R89 818 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 DGKKQ5KSL6 1271 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 CAVIN1Q6NZI2 390 aaKnown RBP13.7□□□□□ -0.22
COL28A1-206ENST00000465339 GJB7Q6PEY0 223 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 C1orf210Q8IVY1 113 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 SCML4Q8N228 414 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 ANKRD20A12PQ8NF67 263 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 ZNF606Q8WXB4 792 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 SHC3Q92529 594 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 OTUB2Q96DC9 234 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 FAM122AQ96E09 287 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 ZFRQ96KR1 1074 aaKnown RBP13.7□□□□□ -0.22
COL28A1-206ENST00000465339 HSFY1Q96LI6 401 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 ZSWIM1Q9BR11 485 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 IER2Q9BTL4 223 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 KLF16Q9BXK1 252 aaPredicted RBP13.7□□□□□ -0.22
COL28A1-206ENST00000465339 LMAN1LQ9HAT1 526 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 SIX2Q9NPC8 291 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 DNAJC12Q9UKB3 198 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 SH3BP1Q9Y3L3 701 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 CACNA1IQ9P0X4 2223 aa13.7□□□□□ -0.22
COL28A1-206ENST00000465339 CACNA1HO95180 2353 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 OTOL1A6NHN0 477 aaPredicted RBP13.69□□□□□ -0.22
COL28A1-206ENST00000465339 H0Y858 1186 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 M0QYV0 167 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 TULP2O00295 520 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 TRDMT1O14717 391 aaKnown RBP13.69□□□□□ -0.22
COL28A1-206ENST00000465339 TBX18O95935 607 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 CHRNB1P11230 501 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 GNA15P30679 374 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 GJA4P35212 333 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 USP8P40818 1118 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 YWHAGP61981 247 aaKnown RBP eCLIP13.69□□□□□ -0.22
COL28A1-206ENST00000465339 KCNMA1Q12791 1236 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 KRT31Q15323 416 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 ANGPT1Q15389 498 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 KLHL40Q2TBA0 621 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 C10orf120Q5SQS8 335 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 TXNDC11Q6PKC3 985 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 HTR3DQ70Z44 454 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 SIX6OS1Q8N1H7 587 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 SYNPOQ8N3V7 929 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 SECISBP2LQ93073 1101 aaKnown RBP13.69□□□□□ -0.22
COL28A1-206ENST00000465339 ULBP1Q9BZM6 244 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 VPS16Q9H269 839 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 CNGB3Q9NQW8 809 aa13.69□□□□□ -0.22
COL28A1-206ENST00000465339 BECN2A8MW95 431 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 THAP12O43422 761 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 CDK11BP21127 795 aaKnown RBP13.68□□□□□ -0.22
COL28A1-206ENST00000465339 PLA2G5P39877 138 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 GPD2P43304 727 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 COG7P83436 770 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 APBA1Q02410 837 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 NHLH1Q02575 133 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 PTK2Q05397 1052 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 ADIGQ0VDE8 80 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 GRSF1Q12849 480 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL28A1-206ENST00000465339 PON2Q15165 354 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 FKBP15Q5T1M5 1219 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 KLHDC7AQ5VTJ3 777 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 BTBD8Q5XKL5 378 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 DPY19L2P1Q6NXN4 242 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 PMF1Q6P1K2 205 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 STK32AQ8WU08 396 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 IRGQQ8WZA9 623 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 ATOH1Q92858 354 aaPredicted RBP13.68□□□□□ -0.22
COL28A1-206ENST00000465339 BPIFA3Q9BQP9 254 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 CHRDQ9H2X0 955 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 ABCC13Q9NSE7 274 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 OLA1Q9NTK5 396 aaKnown RBP13.68□□□□□ -0.22
COL28A1-206ENST00000465339 SPATA6Q9NWH7 488 aaPredicted RBP13.68□□□□□ -0.22
COL28A1-206ENST00000465339 TAB2Q9NYJ8 693 aa13.68□□□□□ -0.22
COL28A1-206ENST00000465339 LIMA1Q9UHB6 759 aaKnown RBP13.68□□□□□ -0.22
COL28A1-206ENST00000465339 LSM7Q9UK45 103 aaKnown RBP13.68□□□□□ -0.22
COL28A1-206ENST00000465339 MYOFQ9NZM1 2061 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms