RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 DRD1P21728 446 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 USP8P40818 1118 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 PDE6CP51160 858 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 ZNF445P59923 1031 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 SPEM2Q0P670 501 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 USP4Q13107 963 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 ZNF77Q15935 545 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 PPP1R26Q5T8A7 1209 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-205ENST00000465238 KLHDC7AQ5VTJ3 777 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 ARHGAP17Q68EM7 881 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 APTXQ7Z2E3 356 aaKnown RBP18.69■□□□□ 0.58
COL7A1-205ENST00000465238 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-205ENST00000465238 OSCP1Q8WVF1 389 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 SLC22A12Q96S37 553 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 CYP2S1Q96SQ9 504 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 DMAP1Q9NPF5 467 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-205ENST00000465238 PLCB1Q9NQ66 1216 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 DUS2Q9NX74 493 aaKnown RBP18.69■□□□□ 0.58
COL7A1-205ENST00000465238 EHD2Q9NZN4 543 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 SPAG17Q6Q759 2223 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 CCDC163A0A0D9SF12 145 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 RNF225M0QZC1 329 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-205ENST00000465238 PFKLP17858 780 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 GJA4P35212 333 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 IFNAR2P48551 515 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 ATXN1P54253 815 aaKnown RBP18.68■□□□□ 0.58
COL7A1-205ENST00000465238 CACNA2D1P54289 1103 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 SRSF5Q13243 272 aaKnown RBP18.68■□□□□ 0.58
COL7A1-205ENST00000465238 SYCP1Q15431 976 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 FBXO43Q4G163 708 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 DENND5BQ6ZUT9 1274 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 CEP68Q76N32 757 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 ATP2A3Q93084 1043 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 KCNK16Q96T55 309 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 P2RY13Q9BPV8 354 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 ECT2Q9H8V3 914 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 CNTN6Q9UQ52 1028 aa18.68■□□□□ 0.58
COL7A1-205ENST00000465238 HELZP42694 1942 aaKnown RBP18.68■□□□□ 0.58
COL7A1-205ENST00000465238 TCF3P15923 654 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 HDCP19113 662 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 GALK1P51570 392 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 MAP3K7CLP57077 242 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 SLC8A3P57103 927 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 RAPGEF1Q13905 1077 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 SMYD5Q6GMV2 418 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 DPY19L2P1Q6NXN4 242 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 PKN3Q6P5Z2 889 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 ARL14EPQ8N8R7 260 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-205ENST00000465238 NEK11Q8NG66 645 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 SHC3Q92529 594 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 ERGIC2Q96RQ1 377 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 SMOQ99835 787 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 RTKNQ9BST9 563 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 DUSP16Q9BY84 665 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 RTN4Q9NQC3 1192 aaKnown RBP18.67■□□□□ 0.58
COL7A1-205ENST00000465238 FAM207AQ9NSI2 230 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-205ENST00000465238 SEMA4GQ9NTN9 838 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 TMEM30AQ9NV96 361 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 HESX1Q9UBX0 185 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 ARHGAP26Q9UNA1 814 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 SLC8A2Q9UPR5 921 aa18.67■□□□□ 0.58
COL7A1-205ENST00000465238 SDK1Q7Z5N4 2213 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 C2orf78A6NCI8 922 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 FOXD2O60548 495 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-205ENST00000465238 RNF40O75150 1001 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 BEST1O76090 585 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 EGFP01133 1207 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 UCHL3P15374 230 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 PPP3CCP48454 512 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 KLK7P49862 253 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 ZNF132P52740 706 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 FANCCQ00597 558 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 NR1H3Q13133 447 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 STILQ15468 1287 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 CSRP2Q16527 193 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 GOLGA7BQ2TAP0 167 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 EML3Q32P44 896 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 NUP93Q8N1F7 819 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 CAMKK1Q8N5S9 505 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 ANKRD52Q8NB46 1076 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 TTC16Q8NEE8 873 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 SH3RF2Q8TEC5 729 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 TTLL2Q9BWV7 592 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 FBRSL1Q9HCM7 1045 aaKnown RBP18.66■□□□□ 0.58
COL7A1-205ENST00000465238 CSNK1G1Q9HCP0 422 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 TRPM5Q9NZQ8 1165 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 SIK3Q9Y2K2 1263 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 DAAM1Q9Y4D1 1078 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 FHOD1Q9Y613 1164 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 WNT6Q9Y6F9 365 aa18.66■□□□□ 0.58
COL7A1-205ENST00000465238 A0A1B0GTH6 734 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 FOXN3O00409 490 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-205ENST00000465238 TEX33O43247 280 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 RTN3O95197 1032 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-205ENST00000465238 HOXC13P31276 330 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 DRAP1Q14919 205 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-205ENST00000465238 CNGA2Q16280 664 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 CLEC20AQ6ZU45 233 aa18.65■□□□□ 0.58
COL7A1-205ENST00000465238 FAM160A2Q8N612 972 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-205ENST00000465238 RNF214Q8ND24 703 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms