RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PILRBQ9UKJ0 227 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 STARD13Q9Y3M8 1113 aa23.93■■□□□ 1.42
USP4-208ENST00000464168 KLRC4O43908 158 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 ENGP17813 658 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 GABRG2P18507 467 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 NDST1P52848 882 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 MAP3K7CLP57077 242 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 STK4Q13043 487 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 SGSM1Q2NKQ1 1148 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 PEAR1Q5VY43 1037 aaPredicted RBP23.92■■□□□ 1.42
USP4-208ENST00000464168 SLC23A3Q6PIS1 610 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 SLC9A9Q8IVB4 645 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 TMEM174Q8WUU8 243 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 KLF16Q9BXK1 252 aaPredicted RBP23.92■■□□□ 1.42
USP4-208ENST00000464168 FBXO44Q9H4M3 255 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 FAM13BQ9NYF5 915 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 PI4KAP42356 2102 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 SPEGQ15772 3267 aa23.92■■□□□ 1.42
USP4-208ENST00000464168 ATXN2Q99700 1313 aaKnown RBP23.91■■□□□ 1.42
USP4-208ENST00000464168 A0A1W2PQF6 199 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 PCNX2A6NKB5 2137 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 NTSR1P30989 418 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 DPP6P42658 865 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 WASP42768 502 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 MAPK8P45983 427 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 ME1P48163 572 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 ZACNQ401N2 412 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 NUDT18Q6ZVK8 323 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 C12orf29Q8N999 325 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 KIAA0895Q8NCT3 520 aa23.91■■□□□ 1.42
USP4-208ENST00000464168 TMEM121BQ9BXQ6 578 aaPredicted RBP23.91■■□□□ 1.42
USP4-208ENST00000464168 TLR8Q9NR97 1041 aaKnown RBP23.91■■□□□ 1.42
USP4-208ENST00000464168 RPN1P04843 607 aaKnown RBP23.9■■□□□ 1.42
USP4-208ENST00000464168 P4HA1P13674 534 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 HOXB2P14652 356 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 HOXD12P35452 270 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 UNC93AQ86WB7 457 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 DEFB119Q8N690 84 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 ACOX2Q99424 681 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 KCTD10Q9H3F6 313 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 CD248Q9HCU0 757 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 FAM49BQ9NUQ9 324 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 DNAJC17Q9NVM6 304 aaKnown RBP23.9■■□□□ 1.42
USP4-208ENST00000464168 OSER1Q9NX31 292 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 CALCOCO1Q9P1Z2 691 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 SERTAD1Q9UHV2 236 aa23.9■■□□□ 1.42
USP4-208ENST00000464168 AP5Z1O43299 807 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 CACNG3O60359 315 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 SLFN14P0C7P3 912 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 ASPAP45381 313 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 RPL6Q02878 288 aaKnown RBP23.89■■□□□ 1.41
USP4-208ENST00000464168 EGFLAMQ63HQ2 1017 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 GRAMD4Q6IC98 578 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 SPOPLQ6IQ16 392 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 SLC36A4Q6YBV0 504 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 SV2AQ7L0J3 742 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 GPRIN1Q7Z2K8 1008 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 CEP57L1Q8IYX8 460 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 KDF1Q8NAX2 398 aaPredicted RBP23.89■■□□□ 1.41
USP4-208ENST00000464168 TMC2Q8TDI7 906 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 TAF4BQ92750 862 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 SCNM1Q9BWG6 230 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 ADAM33Q9BZ11 813 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 CYLDQ9NQC7 956 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 FSCN3Q9NQT6 498 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 RALYQ9UKM9 306 aaKnown RBP23.89■■□□□ 1.41
USP4-208ENST00000464168 ZMIZ1Q9ULJ6 1067 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 SCML2Q9UQR0 700 aa23.89■■□□□ 1.41
USP4-208ENST00000464168 TNRC6BQ9UPQ9 1833 aaKnown RBP23.89■■□□□ 1.41
USP4-208ENST00000464168 PLXND1Q9Y4D7 1925 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 HHLA1C9JL84 531 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 NEDD8-MDP1E9PL57 170 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 ASS1P00966 412 aaKnown RBP23.88■■□□□ 1.41
USP4-208ENST00000464168 CFIP05156 583 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 ZSCAN22P10073 491 aaPredicted RBP23.88■■□□□ 1.41
USP4-208ENST00000464168 TYRP14679 529 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 ATP5C1P36542 298 aaKnown RBP23.88■■□□□ 1.41
USP4-208ENST00000464168 DUOXA1Q1HG43 343 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 C1orf220Q5T0J3 134 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 PIP4P1Q86T03 277 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 CEP76Q8TAP6 659 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 PAGE5Q96GU1 130 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 BBS2Q9BXC9 721 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 BACH2Q9BYV9 841 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 MARK1Q9P0L2 795 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 WDR35Q9P2L0 1181 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 SLC6A14Q9UN76 642 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 PKD1L2Q7Z442 2459 aa23.88■■□□□ 1.41
USP4-208ENST00000464168 IGHV1OR15-9A0A0B4J2B8 117 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 PRRT4C9JH25 899 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 PDXKO00764 312 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 IKBKBO14920 756 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 ACTN4O43707 911 aaKnown RBP23.87■■□□□ 1.41
USP4-208ENST00000464168 NR3C1P04150 777 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 FAM200BP0CF97 657 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 ADORA2BP29275 332 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 SEMA3BQ13214 749 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 KMT5BQ4FZB7 885 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 KIAA1211LQ6NV74 962 aa23.87■■□□□ 1.41
USP4-208ENST00000464168 TPGS1Q6ZTW0 290 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms