RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 TMEFF1Q8IYR6 380 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 ZNF513Q8N8E2 541 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-204ENST00000462475 TERB1Q8NA31 727 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 SPRYD3Q8NCJ5 442 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 JAKMIP2Q96AA8 810 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 TMEM9BQ9NQ34 198 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 OSER1Q9NX31 292 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 DEC1Q9P2X7 70 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 HCN2Q9UL51 889 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 MYOFQ9NZM1 2061 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 ATXN2Q99700 1313 aaKnown RBP17.01■□□□□ 0.31
COL7A1-204ENST00000462475 CDX4O14627 284 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-204ENST00000462475 CYP26A1O43174 497 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 FAM200BP0CF97 657 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 C10orf76Q5T2E6 689 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 DAB2IPQ5VWQ8 1189 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 CLEC20AQ6ZU45 233 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 MIB1Q86YT6 1006 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 PGBD3Q8N328 593 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 TAF4BQ92750 862 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 KLF16Q9BXK1 252 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-204ENST00000462475 FBXO44Q9H4M3 255 aa17.01■□□□□ 0.31
COL7A1-204ENST00000462475 APOBEC3GQ9HC16 384 aaKnown RBP17.01■□□□□ 0.31
COL7A1-204ENST00000462475 TLR8Q9NR97 1041 aaKnown RBP17.01■□□□□ 0.31
COL7A1-204ENST00000462475 THADAQ6YHU6 1953 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 HHLA1C9JL84 531 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 IKBKBO14920 756 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 MAP3K13O43283 966 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 PRR29P0C7W0 189 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 TRIM49P0CI25 452 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 TRIM49CP0CI26 452 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 WASP42768 502 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 ZNF252P-AS1Q0IIN9 211 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 INCA1Q0VD86 236 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 TRIM61Q5EBN2 209 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 SH3PXD2AQ5TCZ1 1133 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 NUP205Q92621 2012 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 NMUR1Q9HB89 426 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 CYLDQ9NQC7 956 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 TMEM74BQ9NUR3 256 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 DNAJC17Q9NVM6 304 aaKnown RBP17■□□□□ 0.31
COL7A1-204ENST00000462475 EVLQ9UI08 416 aaPredicted RBP17■□□□□ 0.31
COL7A1-204ENST00000462475 HPSEQ9Y251 543 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 FRMD4BQ9Y2L6 1034 aa17■□□□□ 0.31
COL7A1-204ENST00000462475 NEDD8-MDP1E9PL57 170 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 MDM4O15151 490 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 CALUO43852 315 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-204ENST00000462475 HOXB2P14652 356 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 GABRG2P18507 467 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 CMA1P23946 247 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 VAMP7P51809 220 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 LYSMD4Q5XG99 296 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 EGFLAMQ63HQ2 1017 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 GRAMD4Q6IC98 578 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 HTR3DQ70Z44 454 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 TRMT11Q7Z4G4 463 aaKnown RBP16.99■□□□□ 0.31
COL7A1-204ENST00000462475 KCNV2Q8TDN2 545 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 TAS1R2Q8TE23 839 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 ACOX2Q99424 681 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 HNRNPABQ99729 332 aaKnown RBP16.99■□□□□ 0.31
COL7A1-204ENST00000462475 NUDT5Q9UKK9 219 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 SCML2Q9UQR0 700 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 TRAF3IP3Q9Y228 551 aa16.99■□□□□ 0.31
COL7A1-204ENST00000462475 A0A1W2PQF6 199 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 A0A1W2PQH9 124 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 CACNG3O60359 315 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 MYL1P05976 194 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 TYRP14679 529 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 ACO1P21399 889 aaKnown RBP16.98■□□□□ 0.31
COL7A1-204ENST00000462475 NR2F2P24468 414 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 ATP5C1P36542 298 aaKnown RBP16.98■□□□□ 0.31
COL7A1-204ENST00000462475 GCLMP48507 274 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 PPP3CAQ08209 521 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 UAP1L1Q3KQV9 507 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 PREPLQ4J6C6 727 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-204ENST00000462475 TPGS1Q6ZTW0 290 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 TOGARAM2Q6ZUX3 1019 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 SYT12Q8IV01 421 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 ERLEC1Q96DZ1 483 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 BBS2Q9BXC9 721 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 NT5C1AQ9BXI3 368 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 NIF3L1Q9GZT8 377 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 MARK1Q9P0L2 795 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 CALCOCO1Q9P1Z2 691 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 USP25Q9UHP3 1055 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 STARD13Q9Y3M8 1113 aa16.98■□□□□ 0.31
COL7A1-204ENST00000462475 PRRT4C9JH25 899 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 MAPK13O15264 365 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 RARGP13631 454 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 CD58P19256 250 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 CSRP1P21291 193 aaKnown RBP16.97■□□□□ 0.31
COL7A1-204ENST00000462475 ITPKAP23677 461 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 NTSR1P30989 418 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 MAPK8P45983 427 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 FOXC1Q12948 553 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 BYSLQ13895 437 aaKnown RBP16.97■□□□□ 0.31
COL7A1-204ENST00000462475 NUDT18Q6ZVK8 323 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 DEFB119Q8N690 84 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 CYFIP2Q96F07 1278 aa16.97■□□□□ 0.31
COL7A1-204ENST00000462475 P2RY11Q96G91 374 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms