RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 USP39Q53GS9 565 aaKnown RBP24.02■■□□□ 1.44
PTPN4-207ENST00000460162 KLHDC10Q6PID8 442 aa24.02■■□□□ 1.44
PTPN4-207ENST00000460162 HTR3DQ70Z44 454 aa24.02■■□□□ 1.44
PTPN4-207ENST00000460162 SFTPA1Q8IWL2 248 aa24.02■■□□□ 1.44
PTPN4-207ENST00000460162 MDGA1Q8NFP4 955 aa24.02■■□□□ 1.44
PTPN4-207ENST00000460162 GSDMAQ96QA5 445 aa24.02■■□□□ 1.44
PTPN4-207ENST00000460162 TPSD1Q9BZJ3 242 aa24.02■■□□□ 1.44
PTPN4-207ENST00000460162 VPS45Q9NRW7 570 aa24.02■■□□□ 1.44
PTPN4-207ENST00000460162 LSM7Q9UK45 103 aaKnown RBP24.02■■□□□ 1.44
PTPN4-207ENST00000460162 NUP205Q92621 2012 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 ANTXRLA6NF34 631 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 KLF8O95600 359 aaPredicted RBP24.01■■□□□ 1.43
PTPN4-207ENST00000460162 GBP1P32455 592 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 TIE1P35590 1138 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 PSEN1P49768 467 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 KIF11P52732 1056 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 CCDC6Q16204 474 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 EOGTQ5NDL2 527 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 ZNF658Q5TYW1 1059 aaPredicted RBP24.01■■□□□ 1.43
PTPN4-207ENST00000460162 CCDC186Q7Z3E2 898 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 TXNDC5Q8NBS9 432 aaKnown RBP24.01■■□□□ 1.43
PTPN4-207ENST00000460162 DDX1Q92499 740 aaKnown RBP24.01■■□□□ 1.43
PTPN4-207ENST00000460162 WBP2Q969T9 261 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 KLF16Q9BXK1 252 aaPredicted RBP24.01■■□□□ 1.43
PTPN4-207ENST00000460162 DUSP16Q9BY84 665 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 OSER1Q9NX31 292 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 RAB20Q9NX57 234 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 DEC1Q9P2X7 70 aa24.01■■□□□ 1.43
PTPN4-207ENST00000460162 DCLK1O15075 740 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 SLC16A3O15427 465 aaKnown RBP24■■□□□ 1.43
PTPN4-207ENST00000460162 GREM1O60565 184 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 TULP3O75386 442 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 BECN1Q14457 450 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 ANO4Q32M45 955 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 PPP1R26Q5T8A7 1209 aaPredicted RBP24■■□□□ 1.43
PTPN4-207ENST00000460162 PMS2CLQ68D20 193 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 TMEM92Q6UXU6 159 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 NUDT18Q6ZVK8 323 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 TADA2BQ86TJ2 420 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 TERB1Q8NA31 727 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 KCNV2Q8TDN2 545 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 SEMA4DQ92854 862 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 EEF2KMTQ96G04 330 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 TSG101Q99816 390 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 NMUR1Q9HB89 426 aa24■■□□□ 1.43
PTPN4-207ENST00000460162 POLMQ9NP87 494 aaPredicted RBP24■■□□□ 1.43
PTPN4-207ENST00000460162 MTPAPQ9NVV4 582 aaKnown RBP eCLIP24■■□□□ 1.43
PTPN4-207ENST00000460162 GOLGA6L4A6NEF3 574 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 SGK1O00141 431 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 TBX18O95935 607 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 RARGP13631 454 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 HNRNPLP14866 589 aaKnown RBP eCLIP23.99■■□□□ 1.43
PTPN4-207ENST00000460162 PRCPP42785 496 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 ZNF394Q53GI3 561 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 TRMT11Q7Z4G4 463 aaKnown RBP23.99■■□□□ 1.43
PTPN4-207ENST00000460162 TMEM25Q86YD3 366 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 ZC3H3Q8IXZ2 948 aaKnown RBP23.99■■□□□ 1.43
PTPN4-207ENST00000460162 ZNF276Q8N554 614 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 GTPBP4Q9BZE4 634 aaKnown RBP23.99■■□□□ 1.43
PTPN4-207ENST00000460162 CISHQ9NSE2 258 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 MARK1Q9P0L2 795 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 USP3Q9Y6I4 520 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 THADAQ6YHU6 1953 aa23.99■■□□□ 1.43
PTPN4-207ENST00000460162 A0A1W2PQH9 124 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 CACNG3O60359 315 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 SMC2O95347 1197 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 DCAF17Q5H9S7 520 aaPredicted RBP23.98■■□□□ 1.43
PTPN4-207ENST00000460162 PPM1JQ5JR12 505 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 IL31Q6EBC2 164 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 NAT16Q8N8M0 369 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 OLIG1Q8TAK6 271 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 SPATA20Q8TB22 786 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 CDK5RAP1Q96SZ6 601 aaKnown RBP23.98■■□□□ 1.43
PTPN4-207ENST00000460162 CLIC5Q9NZA1 410 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 DNMT3LQ9UJW3 386 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 NAGPAQ9UK23 515 aa23.98■■□□□ 1.43
PTPN4-207ENST00000460162 MYO18AQ92614 2054 aaKnown RBP23.98■■□□□ 1.43
PTPN4-207ENST00000460162 BCLAF3A2AJT9 711 aaKnown RBP23.97■■□□□ 1.43
PTPN4-207ENST00000460162 TBC1D3BA6NDS4 549 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 NUCB2P80303 420 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 FKBP3Q00688 224 aaKnown RBP23.97■■□□□ 1.43
PTPN4-207ENST00000460162 CREB5Q02930 508 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 LRRC63Q05C16 580 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 C10orf120Q5SQS8 335 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 C10orf76Q5T2E6 689 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 TCERG1LQ5VWI1 586 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 GRAMD4Q6IC98 578 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 ZNF513Q8N8E2 541 aaPredicted RBP23.97■■□□□ 1.43
PTPN4-207ENST00000460162 SLC4A11Q8NBS3 891 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 ENGASEQ8NFI3 743 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 TMEM176AQ96HP8 235 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 SPACA7Q96KW9 195 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 HEXIM2Q96MH2 286 aaKnown RBP23.97■■□□□ 1.43
PTPN4-207ENST00000460162 XPO6Q96QU8 1125 aaKnown RBP23.97■■□□□ 1.43
PTPN4-207ENST00000460162 ARID3AQ99856 593 aa23.97■■□□□ 1.43
PTPN4-207ENST00000460162 HOOK1Q9UJC3 728 aaKnown RBP23.97■■□□□ 1.43
PTPN4-207ENST00000460162 TNRC6BQ9UPQ9 1833 aaKnown RBP23.96■■□□□ 1.43
PTPN4-207ENST00000460162 NEDD8-MDP1E9PL57 170 aa23.96■■□□□ 1.43
PTPN4-207ENST00000460162 ADAM23O75077 832 aa23.96■■□□□ 1.43
PTPN4-207ENST00000460162 ADRB1P08588 477 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms