RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 GPS1Q13098 491 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 STARD3Q14849 445 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 EZH2Q15910 746 aaKnown RBP4.71□□□□□ -1.66
USP40-209ENST00000452724 CYP1B1Q16678 543 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 SLC5A9Q2M3M2 681 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.71□□□□□ -1.66
USP40-209ENST00000452724 RAP1GAP2Q684P5 730 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 C1orf228Q6PIY5 440 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 CLEC9AQ6UXN8 241 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 USP49Q70CQ1 688 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 KRT73Q86Y46 540 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 RASAL3Q86YV0 1011 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 C11orf44Q8N8P7 122 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 MBD3L2Q8NHZ7 208 aaPredicted RBP4.71□□□□□ -1.66
USP40-209ENST00000452724 TMEM41AQ96HV5 264 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 PRR25Q96S07 402 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 TM7SF3Q9NS93 570 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 TMOD4Q9NZQ9 345 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 SLC39A10Q9ULF5 831 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 ZMYND8Q9ULU4 1186 aaPredicted RBP4.71□□□□□ -1.66
USP40-209ENST00000452724 LRCH1Q9Y2L9 728 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 SLC27A6Q9Y2P4 619 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 COMMD10Q9Y6G5 202 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 AP4M1O00189 453 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 CCNT2O60583 730 aaKnown RBP4.7□□□□□ -1.66
USP40-209ENST00000452724 PMPCBO75439 489 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 NPSP0C0P6 89 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 ARP10275 920 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 CD19P15391 556 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 ITPKBP27987 946 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 SLC5A2P31639 672 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 GKP32189 559 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 IL6STP40189 918 aaPredicted RBP4.7□□□□□ -1.66
USP40-209ENST00000452724 SUMO2P61956 95 aaKnown RBP4.7□□□□□ -1.66
USP40-209ENST00000452724 GRM1Q13255 1194 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 CLCA4Q14CN2 919 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 RAB30Q15771 203 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 SRSF7Q16629 238 aaKnown RBP eCLIP4.7□□□□□ -1.66
USP40-209ENST00000452724 MAPKAPK3Q16644 382 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 TBC1D25Q3MII6 688 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 AARS2Q5JTZ9 985 aaKnown RBP4.7□□□□□ -1.66
USP40-209ENST00000452724 ABLIM2Q6H8Q1 611 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 ZNF804AQ7Z570 1209 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 METTL25Q8N6Q8 603 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 SIRT6Q8N6T7 355 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 VPS37AQ8NEZ2 397 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 ABHD11Q8NFV4 315 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 PMM1Q92871 262 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 MUL1Q969V5 352 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 C18orf8Q96DM3 657 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 WDYHV1Q96HA8 205 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 NAF1Q96HR8 494 aaKnown RBP4.7□□□□□ -1.66
USP40-209ENST00000452724 TTLL2Q9BWV7 592 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 FSD1LQ9BXM9 530 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 WDR12Q9GZL7 423 aaKnown RBP4.7□□□□□ -1.66
USP40-209ENST00000452724 NECTIN3Q9NQS3 549 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 RNF7Q9UBF6 113 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 STEAP1Q9UHE8 339 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 ADAMTS5Q9UNA0 930 aa4.7□□□□□ -1.66
USP40-209ENST00000452724 COL15A1P39059 1388 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 A0A087WV62 115 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 M0R3H8 397 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 CES2O00748 559 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 SPRY2O43597 315 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 PECAM1P16284 738 aaPredicted RBP4.69□□□□□ -1.66
USP40-209ENST00000452724 YY1P25490 414 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 HTR7P34969 479 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 TNFAIP2Q03169 654 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 NSUN2Q08J23 767 aaKnown RBP eCLIP4.69□□□□□ -1.66
USP40-209ENST00000452724 PCID2Q5JVF3 399 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 PAPD7Q5XG87 772 aaKnown RBP4.69□□□□□ -1.66
USP40-209ENST00000452724 MTHFD1LQ6UB35 978 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 SLC29A4Q7RTT9 530 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 FSTL5Q8N475 847 aaPredicted RBP4.69□□□□□ -1.66
USP40-209ENST00000452724 ABHD5Q8WTS1 349 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 TBC1D5Q92609 795 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 CTHRC1Q96CG8 243 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 LENG8Q96PV6 779 aaPredicted RBP4.69□□□□□ -1.66
USP40-209ENST00000452724 CRB3Q9BUF7 120 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 NKX1-2Q9UD57 310 aaPredicted RBP4.69□□□□□ -1.66
USP40-209ENST00000452724 AMFRQ9UKV5 643 aa4.69□□□□□ -1.66
USP40-209ENST00000452724 MAGED2Q9UNF1 606 aaPredicted RBP4.69□□□□□ -1.66
USP40-209ENST00000452724 CGB1A6NKQ9 187 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 LINC01548A6NM66 108 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 A8MVJ9 347 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 F5H423 210 aaPredicted RBP4.68□□□□□ -1.66
USP40-209ENST00000452724 FFAR2O15552 330 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 LDHAP00338 332 aaKnown RBP4.68□□□□□ -1.66
USP40-209ENST00000452724 HNRNPCP07910 306 aaKnown RBP eCLIP4.68□□□□□ -1.66
USP40-209ENST00000452724 CREB1P16220 341 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 ZNF81P51508 661 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 KRTAP10-11P60412 298 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 EIF4A1P60842 406 aaKnown RBP4.68□□□□□ -1.66
USP40-209ENST00000452724 FHL3Q13643 280 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 ATP1A4Q13733 1029 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 ST3GAL2Q16842 350 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 ARHGAP15Q53QZ3 475 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 TMTC4Q5T4D3 741 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 L1TD1Q5T7N2 865 aaKnown RBP4.68□□□□□ -1.66
USP40-209ENST00000452724 ARL6IP4Q66PJ3 421 aaKnown RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms