RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 PKDCCQ504Y2 493 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 ACBD5Q5T8D3 534 aaPredicted RBP12.58□□□□□ -0.4
COL27A1-202ENST00000451716 FAXCQ5TGI0 409 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 C9orf57Q5W0N0 161 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 SPRYD7Q5W111 196 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 NOTUMQ6P988 496 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 C3orf62Q6ZUJ4 267 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 TRABD2AQ86V40 505 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 FBXO36Q8NEA4 188 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.58□□□□□ -0.4
COL27A1-202ENST00000451716 SLC35F5Q8WV83 523 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 TGS1Q96RS0 853 aaKnown RBP12.58□□□□□ -0.4
COL27A1-202ENST00000451716 PARK7Q99497 189 aaKnown RBP12.58□□□□□ -0.4
COL27A1-202ENST00000451716 SLC5A4Q9NY91 659 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 NKIRAS1Q9NYS0 192 aa12.58□□□□□ -0.4
COL27A1-202ENST00000451716 LCP1P13796 627 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 DARSP14868 501 aaKnown RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 IGFBP6P24592 240 aaPredicted RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 WDR4P57081 412 aaKnown RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 ROR1Q01973 937 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 TLK2Q86UE8 772 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 IGDCC3Q8IVU1 814 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 ANKS4BQ8N8V4 417 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 BEST2Q8NFU1 509 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 CKAP2Q8WWK9 683 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SPOCK2Q92563 424 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 NDRG1Q92597 394 aaKnown RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 TTC25Q96NG3 672 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 UBN1Q9NPG3 1134 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 ABCF3Q9NUQ8 709 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 CACNG4Q9UBN1 327 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 HESX1Q9UBX0 185 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 CHMP2BQ9UQN3 213 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SLC45A1Q9Y2W3 748 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 RRN3P2A6NIE6 340 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 A6NJR5 290 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SNX3O60493 162 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 STAU1O95793 577 aaKnown RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 RPSAP08865 295 aaKnown RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SDC4P31431 198 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 FOXN2P32314 431 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 GBP2P32456 591 aaPredicted RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 ARL4CP56559 192 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SLC6A3Q01959 620 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SOX4Q06945 474 aaPredicted RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 MPP3Q13368 585 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 ACAP1Q15027 740 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 FAM47EQ6ZV65 393 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 NT5DC4Q86YG4 428 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 RNF157Q96PX1 679 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SNRNP25Q9BV90 132 aaKnown RBP12.57□□□□□ -0.4
COL27A1-202ENST00000451716 TRABDQ9H4I3 376 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 KIAA1257Q9ULG3 409 aa12.57□□□□□ -0.4
COL27A1-202ENST00000451716 SMIM28A0A1B0GU29 152 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 CCT8L1PA6NM43 557 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 F2P00734 622 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 SCTRP47872 440 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 MFSD10Q14728 455 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 FAM133BQ5BKY9 247 aaKnown RBP12.56□□□□□ -0.4
COL27A1-202ENST00000451716 PLD5Q8N7P1 536 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 FBF1Q8TES7 1133 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 KLF6Q99612 283 aaPredicted RBP12.56□□□□□ -0.4
COL27A1-202ENST00000451716 PLEKHA5Q9HAU0 1116 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 RABGEF1Q9UJ41 708 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 GNEQ9Y223 722 aaKnown RBP12.56□□□□□ -0.4
COL27A1-202ENST00000451716 NRCAMQ92823 1304 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 FAM47DPA6NHR8 397 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 GOLGA8RI6L899 631 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 KCNN4O15554 427 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 ENDOD1O94919 500 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 MYL3P08590 195 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 RPA3P35244 121 aaPredicted RBP12.56□□□□□ -0.4
COL27A1-202ENST00000451716 HDAC4P56524 1084 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 SNX17Q15036 470 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 NOMO1Q15155 1222 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 ARHGEF18Q6ZSZ5 1173 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 CEP128Q6ZU80 1094 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 PCGF5Q86SE9 256 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 TMEM110Q86TL2 294 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 PQLC3Q8N755 202 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 NETO2Q8NC67 525 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 PCDH19Q8TAB3 1148 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 KBTBD7Q8WVZ9 684 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 SLC4A5Q9BY07 1137 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 C12orf65Q9H3J6 166 aaKnown RBP12.56□□□□□ -0.4
COL27A1-202ENST00000451716 NR2E3Q9Y5X4 410 aa12.56□□□□□ -0.4
COL27A1-202ENST00000451716 CYP2B6P20813 491 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 RBL1P28749 1068 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 GJA8P48165 433 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 FBXO47Q5MNV8 452 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 ALKAL1Q6UXT8 129 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 SAPCD2Q86UD0 394 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 PALM2Q8IXS6 379 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 ARRDC4Q8NCT1 418 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 AGAP3Q96P47 875 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 TRIM4Q9C037 500 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 NSRP1Q9H0G5 558 aaKnown RBP12.55□□□□□ -0.4
COL27A1-202ENST00000451716 PCDH18Q9HCL0 1135 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 GRID1Q9ULK0 1009 aa12.55□□□□□ -0.4
COL27A1-202ENST00000451716 MKI67P46013 3256 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms