RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 LETM2Q2VYF4 491 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ZSCAN23Q3MJ62 389 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF484Q5JVG2 852 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 BICRALQ6AI39 1079 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CDPF1Q6NVV7 123 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TTI2Q6NXR4 508 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 WDR73Q6P4I2 378 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 C16orf87Q6PH81 154 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PAOXQ6QHF9 649 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 KANSL1Q7Z3B3 1105 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 NBPF5PQ86XG9 351 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SIX6OS1Q8N1H7 587 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF540Q8NDQ6 660 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CLEC4DQ8WXI8 215 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CFHR4Q92496 578 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 RBM18Q96H35 190 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ABHD1Q96SE0 405 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CD180Q99467 661 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PIP5K1AQ99755 562 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CEP41Q9BYV8 373 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 GPR62Q9BZJ7 368 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC134Q9H6E4 229 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 LIN7CQ9NUP9 197 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ERVK13-1Q9NX77 482 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SELENONQ9NZV5 590 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SCOCQ9UIL1 159 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SARDHQ9UL12 918 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 HPCAL4Q9UM19 191 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 HPSEQ9Y251 543 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 STARD13Q9Y3M8 1113 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TAF6LQ9Y6J9 622 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 FPGT-TNNI3KV9GXZ4 949 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TEX13CA0A0J9YWL9 993 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PI4K2BG5E9Z4 385 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 H0Y858 1186 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TUBB4AP04350 444 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 RB1P06400 928 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 XRCC6P12956 609 aaKnown RBP eCLIP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 C6P13671 934 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 FERP16591 822 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 EPHA8P29322 1005 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MTHFRP42898 656 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PRKAG1P54619 331 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 EIF3BP55884 814 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PSMC6P62333 389 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 GRM4Q14833 912 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 OLFML2BQ68BL8 750 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PPP1R42Q7Z4L9 355 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ADCK2Q7Z695 626 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 KLHL7Q8IXQ5 586 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ADGRF2Q8IZF7 708 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SYT2Q8N9I0 419 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ARRDC4Q8NCT1 418 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PLEKHO2Q8TD55 490 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 UBE2FQ969M7 185 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 REXO5Q96IC2 774 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DMRTA2Q96SC8 542 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SPXQ9BT56 116 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TTPALQ9BTX7 342 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TWSG1Q9GZX9 223 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MRPL18Q9H0U6 180 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TTYH1Q9H313 450 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TLR9Q9NR96 1032 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SIDT1Q9NXL6 827 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ACTR3BQ9P1U1 418 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CGNQ9P2M7 1197 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PALD1Q9ULE6 856 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CHKBQ9Y259 395 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CNTNAP4Q9C0A0 1308 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 THOC2Q8NI27 1593 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 A0A0A6YYJ9 748 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM95CA0A1B0GW59 222 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 LRRD1A4D1F6 860 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 NPIPB15A6NHN6 443 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 NFIBO00712 420 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CAPN9O14815 690 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SYN3O14994 580 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DYRK3O43781 588 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ENTPD3O75355 529 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DEAF1O75398 565 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SNX4O95219 450 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TIAF1O95411 115 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 NTSR2O95665 410 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TMOD1P28289 359 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 BSGP35613 385 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TCF7P36402 384 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PREPP48147 710 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 IFNAR2P48551 515 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 STAT2P52630 851 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 EPHA5P54756 1037 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 HDAC4P56524 1084 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 EIF4A1P60842 406 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 GMFBP60983 142 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 RPL7AP62424 266 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 RUNDC3AQ59EK9 446 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PLAG1Q6DJT9 500 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 KLHL10Q6JEL2 608 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DRICH1Q6PGQ1 229 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 HOOK3Q86VS8 718 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms