RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 GFRA2O00451 464 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 PRPF6O94906 941 aaKnown RBP15.27■□□□□ 0.04
HMGN1-208ENST00000443046 STAU1O95793 577 aaKnown RBP15.27■□□□□ 0.04
HMGN1-208ENST00000443046 CISD3P0C7P0 127 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 ZNF883P0CG24 379 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 GNSP15586 552 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 HOXD13P35453 343 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 IFRD2Q12894 506 aaPredicted RBP15.27■□□□□ 0.04
HMGN1-208ENST00000443046 WDR45BQ5MNZ6 344 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 SYCP2LQ5T4T6 812 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 GRAMD4Q6IC98 578 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 PAQR9Q6ZVX9 377 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 TMPRSS7Q7RTY8 843 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 BRAPQ7Z569 592 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 CHPFQ8IZ52 775 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 OR6B3Q8NGW1 331 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 SLC6A17Q9H1V8 727 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 COMMD8Q9NX08 183 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 TOR4AQ9NXH8 423 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 CCDC39Q9UFE4 941 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 FBXO2Q9UK22 296 aaPredicted RBP15.27■□□□□ 0.04
HMGN1-208ENST00000443046 RAXQ9Y2V3 346 aa15.27■□□□□ 0.04
HMGN1-208ENST00000443046 ZBTB24O43167 697 aaPredicted RBP15.26■□□□□ 0.03
HMGN1-208ENST00000443046 MAOBP27338 520 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 PGFP49763 221 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 BNC1Q01954 994 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 RRAGBQ5VZM2 374 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 SDE2Q6IQ49 451 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 RGL4Q8IZJ4 473 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 B3GALNT2Q8NCR0 500 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 NOC3LQ8WTT2 800 aaKnown RBP15.26■□□□□ 0.03
HMGN1-208ENST00000443046 HNRNPLLQ8WVV9 542 aaKnown RBP15.26■□□□□ 0.03
HMGN1-208ENST00000443046 TMX3Q96JJ7 454 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 KLF16Q9BXK1 252 aaPredicted RBP15.26■□□□□ 0.03
HMGN1-208ENST00000443046 PANK4Q9NVE7 773 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 DNAJC17Q9NVM6 304 aaKnown RBP15.26■□□□□ 0.03
HMGN1-208ENST00000443046 WSB2Q9NYS7 404 aaPredicted RBP15.26■□□□□ 0.03
HMGN1-208ENST00000443046 USP36Q9P275 1121 aaKnown RBP15.26■□□□□ 0.03
HMGN1-208ENST00000443046 FBXO10Q9UK96 956 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 RAD54BQ9Y620 910 aa15.26■□□□□ 0.03
HMGN1-208ENST00000443046 ATMQ13315 3056 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 A0A1B0GTW7 788 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 NDUFS2O75306 463 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 TYRP14679 529 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 IDEP14735 1019 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 CD6P30203 668 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 SLC5A3P53794 718 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 WDR72Q3MJ13 1102 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 GLIS3Q8NEA6 775 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 CADM4Q8NFZ8 388 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 XPO6Q96QU8 1125 aaKnown RBP15.25■□□□□ 0.03
HMGN1-208ENST00000443046 TRIM9Q9C026 710 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 GZF1Q9H116 711 aaPredicted RBP15.25■□□□□ 0.03
HMGN1-208ENST00000443046 XYLT2Q9H1B5 865 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 IL21RQ9HBE5 538 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 KIAA1586Q9HCI6 787 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 ITM2CQ9NQX7 267 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 CACNA2D2Q9NY47 1150 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 HSPBP1Q9NZL4 362 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 GMIPQ9P107 970 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 WDR35Q9P2L0 1181 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 SRPRBQ9Y5M8 271 aaKnown RBP15.25■□□□□ 0.03
HMGN1-208ENST00000443046 CLIC4Q9Y696 253 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 TENM4Q6N022 2769 aa15.25■□□□□ 0.03
HMGN1-208ENST00000443046 A8MXQ7 604 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 WASH3PC4AMC7 463 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 NEDD8-MDP1E9PL57 170 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 CAMK2BQ13554 666 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 ENPP2Q13822 863 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 LARP1BQ659C4 914 aaKnown RBP15.24■□□□□ 0.03
HMGN1-208ENST00000443046 FAM35AQ86V20 835 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 ZMIZ2Q8NF64 920 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 C1orf216Q8TAB5 229 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 ZNF516Q92618 1163 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 ERLEC1Q96DZ1 483 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 P2RY11Q96G91 374 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 BBS2Q9BXC9 721 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 PCDHGB2Q9Y5G2 931 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 KNTC1P50748 2209 aa15.24■□□□□ 0.03
HMGN1-208ENST00000443046 MGAQ8IWI9 3026 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 A0A087WV48 116 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 A0A087X0B3 334 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 KCNJ18B7U540 433 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 CD2BP2O95400 341 aaKnown RBP15.23■□□□□ 0.03
HMGN1-208ENST00000443046 IGLV3-19P01714 112 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 IRF1P10914 325 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 TNNC1P63316 161 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 PSMD6Q15008 389 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 RABEP1Q15276 862 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 SNRNP35Q16560 246 aaKnown RBP15.23■□□□□ 0.03
HMGN1-208ENST00000443046 FUT11Q495W5 492 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 SCFD1Q8WVM8 642 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 COL26A1Q96A83 441 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 TOE1Q96GM8 510 aaKnown RBP15.23■□□□□ 0.03
HMGN1-208ENST00000443046 LRIG1Q96JA1 1093 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 CLIC6Q96NY7 704 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 CGRRF1Q99675 332 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 MKRN2Q9H000 416 aaKnown RBP15.23■□□□□ 0.03
HMGN1-208ENST00000443046 GAREM1Q9H706 876 aa15.23■□□□□ 0.03
HMGN1-208ENST00000443046 VRTNQ9H8Y1 702 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms