RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ACKR2O00590 384 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 ASNA1O43681 348 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 COQ9O75208 318 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 RBMXL2O75526 392 aaKnown RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 INMTO95050 263 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 VEGFAP15692 232 aaPredicted RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 SERPINF1P36955 418 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 LIPAP38571 399 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 CLCN2P51788 898 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 SATB1Q01826 763 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 BMPR2Q13873 1038 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 PTK2BQ14289 1009 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 POSTNQ15063 836 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 MAPKAPK3Q16644 382 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 TIGD6Q17RP2 521 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 TMEM119Q4V9L6 283 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 FAXCQ5TGI0 409 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 SFRP4Q6FHJ7 346 aaPredicted RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 JMJD6Q6NYC1 403 aaPredicted RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 CLEC9AQ6UXN8 241 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 LDHAL6AQ6ZMR3 332 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 ZNF551Q7Z340 670 aaPredicted RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 MAVSQ7Z434 540 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 CACNA2D3Q8IZS8 1091 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 SMCR8Q8TEV9 937 aaPredicted RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 GLG1Q92896 1179 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 TBC1D20Q96BZ9 403 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 HIST1H2AAQ96QV6 131 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 RMDN3Q96TC7 470 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 PRPF18Q99633 342 aaKnown RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 MAGEH1Q9H213 219 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 ARHGEF3Q9NR81 526 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 DACT1Q9NYF0 836 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 RGS17Q9UGC6 210 aaPredicted RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 FESP07332 822 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 HNRNPCP07910 306 aaKnown RBP eCLIP4.11□□□□□ -1.75
VPS41-207ENST00000439468 SRGAP2BP0DMP2 458 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 WT1P19544 449 aaPredicted RBP4.11□□□□□ -1.75
VPS41-207ENST00000439468 DRD4P21917 467 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 KLRK1P26718 216 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 MST1P26927 711 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 PPIFP30405 207 aaKnown RBP4.11□□□□□ -1.75
VPS41-207ENST00000439468 ABCG1P45844 678 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 PDE6CP51160 858 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 PGDP52209 483 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 SOX10P56693 466 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 PROK1P58294 105 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 NHLH1Q02575 133 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 SRSF4Q08170 494 aaKnown RBP4.11□□□□□ -1.75
VPS41-207ENST00000439468 CCNIQ14094 377 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 TAF5Q15542 800 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 PDCD2Q16342 344 aaPredicted RBP4.11□□□□□ -1.75
VPS41-207ENST00000439468 SUMO4Q6EEV6 95 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 ABLIM2Q6H8Q1 611 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 SULT6B1Q6IMI4 303 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 LIN54Q6MZP7 749 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 TLDC1Q6P9B6 456 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 DPY19L3Q6ZPD9 716 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 IZUMO1Q8IYV9 350 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 METTL25Q8N6Q8 603 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 FAM71BQ8TC56 605 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 OSCP1Q8WVF1 389 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 RFKQ969G6 155 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 R3HDM4Q96D70 268 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 FAM227BQ96M60 508 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 EIF2AQ9BY44 585 aaKnown RBP4.11□□□□□ -1.75
VPS41-207ENST00000439468 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.11□□□□□ -1.75
VPS41-207ENST00000439468 MLXIPQ9HAP2 919 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 ZBTB26Q9HCK0 441 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 ITM2CQ9NQX7 267 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 SH3BP4Q9P0V3 963 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 LPAR3Q9UBY5 353 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 VPS51Q9UID3 782 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 CCNL1Q9UK58 526 aaPredicted RBP4.11□□□□□ -1.75
VPS41-207ENST00000439468 GPR52Q9Y2T5 361 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 TNFRSF18Q9Y5U5 241 aa4.11□□□□□ -1.75
VPS41-207ENST00000439468 CCDC189A1A4V9 331 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 A1L4Q6 167 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 QSOX1O00391 747 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 IPO5O00410 1097 aaKnown RBP4.1□□□□□ -1.75
VPS41-207ENST00000439468 FCHO1O14526 889 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 DNPH1O43598 174 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 PRKAR1BP31321 381 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 GRK6P43250 576 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 PPM1FP49593 454 aaPredicted RBP4.1□□□□□ -1.75
VPS41-207ENST00000439468 GATMP50440 423 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 RENBPP51606 427 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 BCAT1P54687 386 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 PDE1AP54750 535 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 GPS1Q13098 491 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 GRM4Q14833 912 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 SLC5A9Q2M3M2 681 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 COLEC12Q5KU26 742 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 TREML2Q5T2D2 321 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 CERCAMQ5T4B2 595 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 ZNF618Q5T7W0 954 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 FCRLBQ6BAA4 426 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 PTF1AQ7RTS3 328 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 SLC29A4Q7RTT9 530 aa4.1□□□□□ -1.75
VPS41-207ENST00000439468 CAND1Q86VP6 1230 aaKnown RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms