RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ALOX15BO15296 676 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 KCNN4O15554 427 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 IL4RP24394 825 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 ACAT1P24752 427 aaKnown RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 RBL1P28749 1068 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 CDH5P33151 784 aaPredicted RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 RDXP35241 583 aaKnown RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 CAV1Q03135 178 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 RNASELQ05823 741 aaKnown RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 POU5F1BQ06416 359 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 SOX4Q06945 474 aaPredicted RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 STAT4Q14765 748 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 CYB5D1Q6P9G0 228 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 PRPF39Q86UA1 669 aaKnown RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 TRABD2AQ86V40 505 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 AGGF1Q8N302 714 aaeCLIP9.87□□□□□ -0.832e-7■■■■■ 57.8
CUX1-206ENST00000437600 FAM172AQ8WUF8 416 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 P3H4Q92791 437 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 LPPQ93052 612 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 RAB6BQ9NRW1 208 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 SLC17A7Q9P2U7 560 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 DCTN4Q9UJW0 460 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 STRIP2Q9ULQ0 834 aa9.87□□□□□ -0.83
CUX1-206ENST00000437600 BARX2Q9UMQ3 279 aaPredicted RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 USP15Q9Y4E8 981 aaPredicted RBP9.87□□□□□ -0.83
CUX1-206ENST00000437600 CHD7Q9P2D1 2997 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 MBLAC1A4D2B0 266 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 C2orf71A6NGG8 1288 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 FAM47DPA6NHR8 397 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 PRPSAP2O60256 369 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 UGT1A9O60656 530 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 ITGAVP06756 1048 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 APRTP07741 180 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 KRT7P08729 469 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 ADRA1DP25100 572 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 GRK4P32298 578 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 GRM5P41594 1212 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 YWHAGP61981 247 aaKnown RBP eCLIP9.86□□□□□ -0.83
CUX1-206ENST00000437600 PITX1P78337 314 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 CRADDP78560 199 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 RBP5P82980 135 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 LMNB2Q03252 620 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 KRT81Q14533 505 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 DNAJC14Q6Y2X3 702 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 CYP4V2Q6ZWL3 525 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 FAM228AQ86W67 206 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 SPATS2Q86XZ4 545 aaKnown RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 CTAGE3PQ8IX95 158 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 CFAP36Q96G28 342 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 NT5C1AQ9BXI3 368 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 LHX5Q9H2C1 402 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 UGT1A7Q9HAW7 530 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 UGT1A10Q9HAW8 530 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 UGT1A8Q9HAW9 530 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 RABGEF1Q9UJ41 708 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 L3MBTL1Q9Y468 752 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 SCN10AQ9Y5Y9 1956 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 SMIM35A0A1B0GVV1 85 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 A8MXQ7 604 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 CLDN5O00501 218 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 SPTLC1O15269 473 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 ADAMTS4O75173 837 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 RASSF9O75901 435 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 ADAM17P78536 824 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 BIRC2Q13490 618 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 LRRC38Q5VT99 294 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 BSPRYQ5W0U4 402 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 GDF6Q6KF10 455 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 LVRNQ6Q4G3 990 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 SPATA21Q7Z572 469 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 UNC5BQ8IZJ1 945 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 CMASQ8NFW8 434 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 NKD2Q969F2 451 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 TMEM237Q96Q45 408 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 DDX56Q9NY93 547 aaKnown RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 IL1RAPL1Q9NZN1 696 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 DRG1Q9Y295 367 aaKnown RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 TIMM13Q9Y5L4 95 aaPredicted RBP9.86□□□□□ -0.83
CUX1-206ENST00000437600 THSD7BQ9C0I4 1608 aa9.86□□□□□ -0.83
CUX1-206ENST00000437600 C2CD4BA6NLJ0 364 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PAPSS1O43252 624 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 TOP3BO95985 862 aaKnown RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 GPD1P21695 349 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 HOXD10P28358 340 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ZNF268Q14587 947 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 MORF4L2Q15014 288 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 KBTBD12Q3ZCT8 623 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PAN2Q504Q3 1202 aaKnown RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 ARHGEF18Q6ZSZ5 1173 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 BBS12Q6ZW61 710 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 RPAINQ86UA6 219 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 TP53INP2Q8IXH6 220 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 REM2Q8IYK8 340 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 NAT8LQ8N9F0 302 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 BBOF1Q8ND07 529 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 KHSRPQ92945 711 aaKnown RBP eCLIP9.85□□□□□ -0.833e-7■■■■□ 19.9
CUX1-206ENST00000437600 FAF2Q96CS3 445 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 SMC6Q96SB8 1091 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms