RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ALG13Q9NP73 1137 aaKnown RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 BTBD7Q9P203 1132 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 ZC3H7BQ9UGR2 993 aaKnown RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 FZD9O00144 591 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 ENTPD5O75356 428 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 ZBED1O96006 694 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 C1QAP02745 245 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 PHKA2P46019 1235 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 PTDSS1P48651 473 aaKnown RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 RPS6KA3P51812 740 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 BCAR1P56945 870 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 SNX16P57768 344 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 PRAMEF18Q5VWM3 479 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 SLC9A4Q6AI14 798 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 JADE1Q6IE81 842 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 EFCAB12Q6NXP0 572 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 C1orf228Q6PIY5 440 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 CTAGE3PQ8IX95 158 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 PPM1NQ8N819 430 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 DRAXINQ8NBI3 349 aaPredicted RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP4-205ENST00000431357 CXorf38Q8TB03 319 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 CFAP36Q96G28 342 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 POPDC2Q9HBU9 364 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 ETNK2Q9NVF9 386 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP4-205ENST00000431357 FZD1Q9UP38 647 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 PLLPQ9Y342 182 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 NUMBLQ9Y6R0 609 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 A8MXQ7 604 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 GPR25O00155 361 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 MYL2P10916 166 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 ANK1P16157 1881 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 VHLP40337 213 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 SERPINB9P50453 376 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 MRPS35P82673 323 aaKnown RBP11.73□□□□□ -0.53
USP4-205ENST00000431357 ORC1Q13415 861 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 CCDC6Q16204 474 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 DBN1Q16643 649 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 HSDL1Q3SXM5 330 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 CAPRIN2Q6IMN6 1127 aaKnown RBP11.73□□□□□ -0.53
USP4-205ENST00000431357 FAM183BPQ6ZVS7 135 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 NT5DC4Q86YG4 428 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 CDKL3Q8IVW4 592 aaPredicted RBP11.73□□□□□ -0.53
USP4-205ENST00000431357 UBA3Q8TBC4 463 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 MICAL1Q8TDZ2 1067 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 DNAJC9Q8WXX5 260 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 HPDLQ96IR7 371 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 ZNF670Q9BS34 389 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 GBA2Q9HCG7 927 aaPredicted RBP11.73□□□□□ -0.53
USP4-205ENST00000431357 IRAK4Q9NWZ3 460 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 HMGXB4Q9UGU5 601 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 ITGA11Q9UKX5 1188 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 LTBP3Q9NS15 1303 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 A0A0G2JMZ2 1700 aa11.73□□□□□ -0.53
USP4-205ENST00000431357 A6NHS1 94 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 FCHO1O14526 889 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 MDM4O15151 490 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 ARIH2O95376 493 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 SLC25A27O95847 323 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 APOEP02649 317 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 ZFXP17010 805 aaPredicted RBP11.72□□□□□ -0.53
USP4-205ENST00000431357 RBP5P82980 135 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 MTM1Q13496 603 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 TBCCQ15814 346 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 KHDC1Q4VXA5 237 aaKnown RBP11.72□□□□□ -0.53
USP4-205ENST00000431357 PRPF39Q86UA1 669 aaKnown RBP11.72□□□□□ -0.53
USP4-205ENST00000431357 TRIM50Q86XT4 487 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 IFNLR1Q8IU57 520 aaPredicted RBP11.72□□□□□ -0.53
USP4-205ENST00000431357 TMEM192Q8IY95 271 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 E2F7Q96AV8 911 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 NT5C1AQ9BXI3 368 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 GCOM2Q9BZD3 368 aaPredicted RBP11.72□□□□□ -0.53
USP4-205ENST00000431357 WWP1Q9H0M0 922 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 PCDH18Q9HCL0 1135 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 ZFATQ9P243 1243 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 E5RJQ4 531 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 H0Y3Z8 333 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 BIRC5O15392 142 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 MAGEC1O60732 1142 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 RARBP10826 455 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 TPSB2P20231 275 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 IL4RP24394 825 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 CNTFP26441 200 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 RBL1P28749 1068 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 ABL2P42684 1182 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 NDST1P52848 882 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 NRLP54845 237 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 TMEM132DQ14C87 1099 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 TPSAB1Q15661 275 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 C15orf59Q2T9L4 293 aaPredicted RBP11.72□□□□□ -0.53
USP4-205ENST00000431357 MUM1Q2TAK8 710 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 CCDC14Q49A88 953 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 ZNF484Q5JVG2 852 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 TREML2Q5T2D2 321 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 SH3PXD2AQ5TCZ1 1133 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 RFWD3Q6PCD5 774 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 CYS1Q717R9 158 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 EEPD1Q7L9B9 569 aa11.72□□□□□ -0.53
USP4-205ENST00000431357 CAND1Q86VP6 1230 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms