RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 ATP5J2P56134 94 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 FMO1Q01740 532 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 RAPSNQ13702 412 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 GCKRQ14397 625 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ELOCQ15369 112 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 HLFQ16534 295 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 SYDE2Q5VT97 1194 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 RNF20Q5VTR2 975 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 VITQ6UXI7 678 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 VASH2Q86V25 355 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TMEM156Q8N614 296 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 LZTR1Q8N653 840 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ESX1Q8N693 406 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 LMNTD1Q8N9Z9 388 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF564Q8TBZ8 553 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 EDEM1Q92611 657 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 MCCC1Q96RQ3 725 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 C16orf70Q9BSU1 422 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 API5Q9BZZ5 524 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TINAGL1Q9GZM7 467 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CNNM2Q9H8M5 875 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 SLTMQ9NWH9 1034 aaKnown RBP eCLIP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 SYNPO2Q9UMS6 1093 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PLAAQ9Y263 795 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PCDHB4Q9Y5E5 795 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CSNK1G3Q9Y6M4 447 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PTPN23Q9H3S7 1636 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PSMD12O00232 456 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 RNF103O00237 685 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TSPAN3O60637 253 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 KRT33AO76009 404 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 APOEP02649 317 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 MMP1P03956 469 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 SPATA31C1P0DKV0 1188 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 FBLN1P23142 703 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 VPS41P49754 854 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 NKX6-1P78426 367 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF177Q13360 481 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 NAB2Q15742 525 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 RPTNQ6XPR3 784 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 C15orf39Q6ZRI6 1047 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CEP128Q6ZU80 1094 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CYFIP1Q7L576 1253 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF438Q7Z4V0 828 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 FAM184AQ8NB25 1140 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 DENND1AQ8TEH3 1009 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TMEM40Q8WWA1 233 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 IPCEF1Q8WWN9 437 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PIGTQ969N2 578 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ELMO2Q96JJ3 720 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TCEANC2Q96MN5 208 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 HGH1Q9BTY7 390 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 DNAJC25Q9H1X3 360 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CHRDQ9H2X0 955 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZSWIM4Q9H7M6 989 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 FAIMQ9NVQ4 179 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 GRIP1Q9Y3R0 1128 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 DUSP10Q9Y6W6 482 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PTPRJQ12913 1337 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CD163L1Q9NR16 1453 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZBTB42B2RXF5 422 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 EIF3JO75822 258 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 TSPAN12O95859 305 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 CD63P08962 238 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ITGB6P18564 788 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 CYP2A7P20853 494 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 PRCPP42785 496 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 RAB25P57735 213 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 EIF4A1P60842 406 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 KRT85P78386 507 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ITKQ08881 620 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 RUNX3Q13761 415 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 CDKN3Q16667 212 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 GARNL3Q5VVW2 1013 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ANKS6Q68DC2 871 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF787Q6DD87 383 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 SWSAP1Q6NVH7 229 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 CDC42EP5Q6NZY7 148 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 TPGS1Q6ZTW0 290 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ADCK2Q7Z695 626 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 RIOX2Q8IUF8 465 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ARID3BQ8IVW6 561 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ITPRIPQ8IWB1 547 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 MMP21Q8N119 569 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 NME8Q8N427 588 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 AVL9Q8NBF6 648 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 COLGALT1Q8NBJ5 622 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 RCBTB1Q8NDN9 531 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 Q8NFD4 153 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 MAIP1Q8WWC4 291 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 FAM149B1Q96BN6 582 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 PCMTD1Q96MG8 357 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 MED18Q9BUE0 208 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 NIFKQ9BYG3 293 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 MKRN2Q9H000 416 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 UPF2Q9HAU5 1272 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF226Q9NYT6 803 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 IL1RAPL1Q9NZN1 696 aa2.87□□□□□ -1.95
CCDC88A-205ENST00000426576 R3HDM2Q9Y2K5 976 aaKnown RBP2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms