RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 STX3Q13277 289 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 HIC1Q14526 733 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 TARBP2Q15633 366 aaKnown RBP11.44□□□□□ -0.58
LIMS1-207ENST00000422797 STXBP2Q15833 593 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 BOLA3Q53S33 107 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 C1orf146Q5VVC0 180 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 RIPOR1Q6ZS17 1223 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 CTAGE3PQ8IX95 158 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 NME8Q8N427 588 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 PPM1NQ8N819 430 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 RBM15BQ8NDT2 890 aaKnown RBP11.44□□□□□ -0.58
LIMS1-207ENST00000422797 GSDMBQ8TAX9 411 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 WDR60Q8WVS4 1066 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 TFAP2BQ92481 460 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 ATP2A3Q93084 1043 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 ZBTB45Q96K62 511 aaPredicted RBP11.44□□□□□ -0.58
LIMS1-207ENST00000422797 C12orf42Q96LP6 360 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 ACAP3Q96P50 834 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 CCDC106Q9BWC9 280 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 CALN1Q9BXU9 219 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 PPP1R12CQ9BZL4 782 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 MTMR12Q9C0I1 747 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 METTL5Q9NRN9 209 aaKnown RBP11.44□□□□□ -0.58
LIMS1-207ENST00000422797 KRT82Q9NSB4 513 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 ITGA11Q9UKX5 1188 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 NUMBLQ9Y6R0 609 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 WDR81Q562E7 1941 aa11.44□□□□□ -0.58
LIMS1-207ENST00000422797 FAM237BA0A1B0GVD1 139 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 FAM159BA6NKW6 160 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 APOL1O14791 398 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 PRPSAP2O60256 369 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 CCNT2O60583 730 aaKnown RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 MAFO75444 373 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 RGS20O76081 388 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 RTN3O95197 1032 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ZBED1O96006 694 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 C1QAP02745 245 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ENO1P06733 434 aaKnown RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 LYNP07948 512 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 CCDC130P13994 396 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 CD19P15391 556 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 SSTR3P32745 418 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 RAB27AP51159 221 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 GAD2Q05329 585 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ASPHQ12797 758 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 CUL3Q13618 768 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 CAPSQ13938 189 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 KRT81Q14533 505 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 CHI3L2Q15782 390 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 KYAT1Q16773 422 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 INSCQ1MX18 579 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 SMTNL2Q2TAL5 461 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ZNF667Q5HYK9 610 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 EFHC1Q5JVL4 640 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 SNRNP48Q6IEG0 339 aaKnown RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 PRPF39Q86UA1 669 aaKnown RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ARID3BQ8IVW6 561 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 DHX37Q8IY37 1157 aaKnown RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ARFGAP1Q8N6T3 406 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 REPS2Q8NFH8 660 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 JOSD2Q8TAC2 188 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 UCMAQ8WVF2 138 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 NCSTNQ92542 709 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ACSF2Q96CM8 615 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ZBTB10Q96DT7 871 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 CFAP36Q96G28 342 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 RNF157Q96PX1 679 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ACO2Q99798 780 aaKnown RBP11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ADPGKQ9BRR6 497 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 TCHPQ9BT92 498 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 TEX13BQ9BXU2 312 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 XYLT2Q9H1B5 865 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 VRTNQ9H8Y1 702 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 RAB6BQ9NRW1 208 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 ADAMTS5Q9UNA0 930 aa11.43□□□□□ -0.58
LIMS1-207ENST00000422797 PEX1O43933 1283 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 MSCO60682 206 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 GLRA3O75311 464 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 RFPL1O75677 317 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 STK10O94804 968 aaKnown RBP11.42□□□□□ -0.58
LIMS1-207ENST00000422797 CST3P01034 146 aaPredicted RBP11.42□□□□□ -0.58
LIMS1-207ENST00000422797 ERBB2P04626 1255 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 PRKCBP05771 671 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 VDRP11473 427 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 MLNP12872 115 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 ACAT1P24752 427 aaKnown RBP11.42□□□□□ -0.58
LIMS1-207ENST00000422797 MAGEA3P43357 314 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 PSMC4P43686 418 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 TUBP50607 506 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 CDK7P50613 346 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 AQP5P55064 265 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 CDH6P55285 790 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 ZBTB41Q5SVQ8 909 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 THEMIS2Q5TEJ8 643 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 DCAF15Q66K64 600 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 MPZL3Q6UWV2 235 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 IZUMO2Q6UXV1 221 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 DEFB132Q7Z7B7 95 aa11.42□□□□□ -0.58
LIMS1-207ENST00000422797 ALYREFQ86V81 257 aaKnown RBP11.42□□□□□ -0.58
LIMS1-207ENST00000422797 IGDCC3Q8IVU1 814 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms