RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 Q4G0T1 1027 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 G2E3Q7L622 706 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 TMEM132CQ8N3T6 1108 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 SENP2Q9HC62 589 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 ABCB11O95342 1321 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 CPSF4O95639 269 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 CDC25AP30304 524 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 TUBA4AP68366 448 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 FGD3Q5JSP0 725 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 MED8Q96G25 268 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 ITCHQ96J02 903 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 RSL24D1Q9UHA3 163 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 EMSYQ7Z589 1322 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 GDF11O95390 407 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PGK1P00558 417 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PSMC5P62195 406 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 MAD2L1Q13257 205 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 EXOC3L1Q86VI1 746 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 AMER2Q8N7J2 671 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 MAGEE2Q8TD90 523 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 KCTD10Q9H3F6 313 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 RSAD1Q9HA92 442 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 TBC1D24Q9ULP9 559 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 CD109Q6YHK3 1445 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 KIF20BQ96Q89 1820 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 O00370 1275 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PRRG1O14668 218 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC16A4O15374 487 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 CDH3P22223 829 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PRCPP42785 496 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 OMPP47874 163 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 BIKQ13323 160 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PLCL1Q15111 1095 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PLA2G4FQ68DD2 849 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 DCAF4Q8WV16 495 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 FAM120BQ96EK7 910 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PNKPQ96T60 521 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 PIF1Q9H611 641 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 TBC1D22BQ9NU19 505 aa13.71□□□□□ -0.21
CCDC88A-204ENST00000413716 TSPAN4O14817 238 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 STAU1O95793 577 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 NECAB2Q7Z6G3 386 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 ERO1BQ86YB8 467 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 AGPAT1Q99943 283 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 AHSPQ9NZD4 102 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 SLCO1B7G3V0H7 640 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 GJA1P17302 382 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 YY1P25490 414 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 SV2CQ496J9 727 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 OR6Y1Q8NGX8 325 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 USP7Q93009 1102 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 ADPRHL2Q9NX46 363 aa13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 ABT1Q9ULW3 272 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-204ENST00000413716 OR14I1A6ND48 311 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 PPEF1O14829 653 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 TKTP29401 623 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 CAPGP40121 348 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 DENND6BQ8NEG7 585 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC9A8Q9Y2E8 581 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 LYVE1Q9Y5Y7 322 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 CITO14578 2027 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 MYBPC2Q14324 1141 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 RASSF1Q9NS23 344 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 HEY2Q9UBP5 337 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 NUDT5Q9UKK9 219 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ARHGEF10O15013 1369 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SH2B2O14492 632 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 FDFT1P37268 417 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 RASA2Q15283 850 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 PFKFB3Q16875 520 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 DOK7Q18PE1 504 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 MRNIPQ6NTE8 343 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ARHGAP27Q6ZUM4 889 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 TEX13BQ9BXU2 312 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 TMEM168Q9H0V1 697 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 RIBC2Q9H4K1 309 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 PSMD11O00231 422 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 HSD3B1P14060 373 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC29A2Q14542 456 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 STILQ15468 1287 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 LRRC70Q7Z2Q7 622 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SGF29Q96ES7 293 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF512Q96ME7 567 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC4A9Q96Q91 983 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 RMDN3Q96TC7 470 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 PI4KBQ9UBF8 816 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 ANXA9O76027 345 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SCAIQ8N9R8 606 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 PUS7LQ9H0K6 701 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 PHTF1Q9UMS5 762 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 BIVM-ERCC5R4GMW8 1640 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 CCDC154A6NI56 674 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 RGS14O43566 566 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 RPS6KA5O75582 802 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 KRT36O76013 467 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SKP1P63208 163 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 SEMA3FQ13275 785 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 TUBA3CQ13748 450 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 MEIOBQ8N635 442 aa13.7□□□□□ -0.22
CCDC88A-204ENST00000413716 UNKQ9C0B0 810 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms