RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 BPIFA3Q9BQP9 254 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 KLF16Q9BXK1 252 aaPredicted RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 LHX5Q9H2C1 402 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 SMOC2Q9H3U7 446 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 UBE2TQ9NPD8 197 aaPredicted RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 PLCB1Q9NQ66 1216 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 PRMT8Q9NR22 394 aaPredicted RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 FAM49BQ9NUQ9 324 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 SPATA6Q9NWH7 488 aaPredicted RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 RRN3Q9NYV6 651 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 GTSE1Q9NYZ3 720 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 TSPAN16Q9UKR8 245 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 PCDHGC3Q9UN70 934 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP54-202ENST00000413442 STARD13Q9Y3M8 1113 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 HBS1LQ9Y450 684 aaKnown RBP6.72□□□□□ -1.33
USP54-202ENST00000413442 CPQQ9Y646 472 aa6.72□□□□□ -1.33
USP54-202ENST00000413442 SHISA7A6NL88 538 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 H0Y858 1186 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 GFRA2O00451 464 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 ZBTB24O43167 697 aaPredicted RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 IRAK2O43187 625 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 HOXC11O43248 304 aaPredicted RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 HCRTO43612 131 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 LILRB5O75023 590 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 BEST1O76090 585 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 LMNAP02545 664 aaKnown RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 CYBBP04839 570 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 DCNP07585 359 aaKnown RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 SP9P0CG40 484 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 SLC2A3P11169 496 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 PON1P27169 355 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 GRIA2P42262 883 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 GPD2P43304 727 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 HARS2P49590 506 aaKnown RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 TKTL1P51854 596 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 CACNA2D1P54289 1103 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 YWHAGP61981 247 aaKnown RBP eCLIP6.71□□□□□ -1.34
USP54-202ENST00000413442 BYSLQ13895 437 aaKnown RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 DHCR24Q15392 516 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 TCP11X2Q5H9J9 407 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 EFHC1Q5JVL4 640 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 FKBP15Q5T1M5 1219 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 CCDC183Q5T5S1 534 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 PPP1R2P3Q6NXS1 205 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 SYT13Q7L8C5 426 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 TMEM110Q86TL2 294 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 IRF2BP1Q8IU81 584 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 CREBRFQ8IUR6 639 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 SIX6OS1Q8N1H7 587 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 CPXM2Q8N436 756 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 RBBP8NLQ8NC74 664 aaPredicted RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 MSANTD4Q8NCY6 345 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 C1orf131Q8NDD1 294 aaKnown RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 SHC3Q92529 594 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 PLD4Q96BZ4 506 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 TWNKQ96RR1 684 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 SLC22A12Q96S37 553 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 INTS2Q9H0H0 1204 aaKnown RBP6.71□□□□□ -1.34
USP54-202ENST00000413442 EBF3Q9H4W6 596 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 HPS4Q9NQG7 708 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 SPHK2Q9NRA0 654 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 TMEM30AQ9NV96 361 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 ASNSD1Q9NWL6 643 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 MARK1Q9P0L2 795 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 DEC1Q9P2X7 70 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 EBF1Q9UH73 591 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 STOML2Q9UJZ1 356 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 NAGPAQ9UK23 515 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 CCL26Q9Y258 94 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 CEP83Q9Y592 693 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 PAXBP1Q9Y5B6 917 aa6.71□□□□□ -1.34
USP54-202ENST00000413442 KCNJ18B7U540 433 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 NRG2O14511 850 aaPredicted RBP6.7□□□□□ -1.34
USP54-202ENST00000413442 LRP3O75074 770 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 ALDH1A2O94788 518 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 APODP05090 189 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 CDK11BP21127 795 aaKnown RBP6.7□□□□□ -1.34
USP54-202ENST00000413442 KRT9P35527 623 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 SCNN1AP37088 669 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 DPP6P42658 865 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 MYL5Q02045 173 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 IFRD2Q12894 506 aaPredicted RBP6.7□□□□□ -1.34
USP54-202ENST00000413442 KCNJ12Q14500 433 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 TRIP4Q15650 581 aaPredicted RBP6.7□□□□□ -1.34
USP54-202ENST00000413442 STX1AQ16623 288 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 DPCR1Q3MIW9 517 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 MPPE1Q53F39 396 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 SPDYCQ5MJ68 293 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 EOGTQ5NDL2 527 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 C10orf120Q5SQS8 335 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 BSPRYQ5W0U4 402 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 NUGGCQ68CJ6 796 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 SDE2Q6IQ49 451 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 MSANTD2Q6P1R3 559 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 RHBDF2Q6PJF5 856 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 RSRC2Q7L4I2 434 aaKnown RBP6.7□□□□□ -1.34
USP54-202ENST00000413442 ARCQ7LC44 396 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 LONP2Q86WA8 852 aa6.7□□□□□ -1.34
USP54-202ENST00000413442 TTC30AQ86WT1 665 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms