RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 MCL1Q07820 350 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 TWF1Q12792 350 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 FOXD4Q12950 439 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-204ENST00000412568 CNGA2Q16280 664 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 ASTE1Q2TB18 679 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-204ENST00000412568 LRRC6Q86X45 466 aa11.59□□□□□ -0.55
PTPRF-204ENST00000412568 NIFKQ9BYG3 293 aaKnown RBP11.59□□□□□ -0.55
PTPRF-204ENST00000412568 R3HDM2Q9Y2K5 976 aaKnown RBP11.59□□□□□ -0.55
PTPRF-204ENST00000412568 CRYBG1Q9Y4K1 1723 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 TBKBP1A7MCY6 615 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 GOLGA8TH3BQL2 631 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 CFHP08603 1231 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 PAEPP09466 180 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 SLC6A3Q01959 620 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 SP3Q02447 781 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 USP10Q14694 798 aaKnown RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 GPR152Q8TDT2 470 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 TFAP2BQ92481 460 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 ERP27Q96DN0 273 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 STAMBPL1Q96FJ0 436 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 LPIN3Q9BQK8 851 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 TRPV2Q9Y5S1 764 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 SLC12A8A0AV02 714 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 ELK3P41970 407 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 RECQLP46063 649 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 ERMARDQ5T6L9 678 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 KCNT2Q6UVM3 1135 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 RAB44Q7Z6P3 723 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 PTPRN2Q92932 1015 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 GRAMD1AQ96CP6 724 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 TRIM56Q9BRZ2 755 aaKnown RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 MUC3BQ9H195 1237 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 AFF4Q9UHB7 1163 aaKnown RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 SLC39A10Q9ULF5 831 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 FAF1Q9UNN5 650 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 YBX3P16989 372 aaKnown RBP eCLIP11.58□□□□□ -0.569e-8■■□□□ 11.5
PTPRF-204ENST00000412568 PTPN1P18031 435 aaKnown RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 ICAM3P32942 547 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 LHX1P48742 406 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 CRADDP78560 199 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 SLC39A12Q504Y0 691 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 SH2D4BQ5SQS7 431 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 RNF219Q5W0B1 726 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 KLC3Q6P597 504 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 ARRDC4Q8NCT1 418 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 ASIC4Q96FT7 647 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 SENP6Q9GZR1 1112 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-204ENST00000412568 NAALADL1Q9UQQ1 740 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 NCANO14594 1321 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 C4BP0C0L5 1744 aa11.58□□□□□ -0.56
PTPRF-204ENST00000412568 TTLL13PA6NNM8 815 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 RGS20O76081 388 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 ALDH2P05091 517 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 KDELR1P24390 212 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 ABCG1P45844 678 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 KDSRQ06136 332 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 SNX17Q15036 470 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 GIPC2Q8TF65 315 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 CCDC124Q96CT7 223 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 HMX1Q9NP08 348 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 APOBEC2Q9Y235 224 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 TAF5Q15542 800 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 DEFB115Q30KQ5 88 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 LRRC57Q8N9N7 239 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 PPME1Q9Y570 386 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 SIGLEC16A6NMB1 481 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 SNRPAP09012 282 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 SETSIPP0DME0 302 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 JAM2P57087 298 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 GEMIN4P57678 1058 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 PDK2Q15119 407 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 MSL3Q8N5Y2 521 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 COLGALT1Q8NBJ5 622 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 GANCQ8TET4 914 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 ABTB1Q969K4 478 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 NTPCRQ9BSD7 190 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 FAM129AQ9BZQ8 928 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 PDZD7Q9H5P4 517 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 RGS17Q9UGC6 210 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 DDX20Q9UHI6 824 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 SMIM28A0A1B0GU29 152 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 DCDC2CA8MYV0 355 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 POLBP06746 335 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 DARSP14868 501 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 PAPOLAP51003 745 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 ALDH18A1P54886 795 aaKnown RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 SLC39A4Q6P5W5 647 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 RNF168Q8IYW5 571 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-204ENST00000412568 TTC8Q8TAM2 541 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 PAFAH2Q99487 392 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 VCX3AQ9NNX9 186 aa11.57□□□□□ -0.56
PTPRF-204ENST00000412568 LAMB4A4D0S4 1761 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TSPAN3O60637 253 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 CHRNB2P17787 502 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TGM2P21980 687 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 MMP8P22894 467 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TNFRSF8P28908 595 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 HNRNPH1P31943 449 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 CHKAP35790 457 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms