RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RSAD1Q9HA92 442 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 HEY2Q9UBP5 337 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 ZFP69BQ9UJL9 534 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 PCDHGC3Q9UN70 934 aa13.92□□□□□ -0.18
VPS54-203ENST00000409558 ASB14A6NK59 587 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 ALDH3A1P30838 453 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 ZNF143P52747 638 aaPredicted RBP13.91□□□□□ -0.18
VPS54-203ENST00000409558 LAMC2Q13753 1193 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 FYB2Q5VWT5 728 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 NLRP9Q7RTR0 991 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 CCDC125Q86Z20 511 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 PDCD7Q8N8D1 485 aaKnown RBP13.91□□□□□ -0.18
VPS54-203ENST00000409558 NAT8LQ8N9F0 302 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 USP33Q8TEY7 942 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 TMEM40Q8WWA1 233 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 NKD2Q969F2 451 aaPredicted RBP13.91□□□□□ -0.18
VPS54-203ENST00000409558 SHOC2Q9UQ13 582 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 NME7Q9Y5B8 376 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 FAM237BA0A1B0GVD1 139 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 COPEO14579 308 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 YBX3P16989 372 aaKnown RBP eCLIP13.91□□□□□ -0.183e-7■■■□□ 17.3
VPS54-203ENST00000409558 ADIGQ0VDE8 80 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 RNF157Q96PX1 679 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 RHOBTB2Q9BYZ6 727 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 C2CD4BA6NLJ0 364 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 GNL1P36915 607 aaPredicted RBP13.91□□□□□ -0.18
VPS54-203ENST00000409558 MXRA7P84157 204 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 SLC20A2Q08357 652 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 NR1H3Q13133 447 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 ZNF268Q14587 947 aaPredicted RBP13.91□□□□□ -0.18
VPS54-203ENST00000409558 FASTKD5Q7L8L6 764 aaKnown RBP13.91□□□□□ -0.18
VPS54-203ENST00000409558 TTC13Q8NBP0 860 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 CYTH2Q99418 400 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 GJD2Q9UKL4 321 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 LOC102724159A0A0B4J2E5 919 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 IGKV6-21A0A0C4DH24 114 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 TREHO43280 583 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 SERPINB3P29508 390 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 TAP1Q03518 808 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 KDSRQ06136 332 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 PWP2Q15269 919 aaKnown RBP13.91□□□□□ -0.18
VPS54-203ENST00000409558 PLEKHG4Q58EX7 1191 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 LONP2Q86WA8 852 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 MANSC1Q9H8J5 431 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 PCDH18Q9HCL0 1135 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 INPP5FQ9Y2H2 1132 aa13.91□□□□□ -0.18
VPS54-203ENST00000409558 SPTLC1O15269 473 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 ENTPD5O75356 428 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 MAP3K7CLP57077 242 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 TNFAIP2Q03169 654 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 CCL14Q16627 93 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 ANKRD20A3Q5VUR7 823 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 TAPT1Q6NXT6 567 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 RNF34Q969K3 372 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 TBCBQ99426 244 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 SIK2Q9H0K1 926 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 AP4E1Q9UPM8 1137 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 KIF13BQ9NQT8 1826 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 ATP9BO43861 1147 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 CLNS1AP54105 237 aaKnown RBP13.9□□□□□ -0.18
VPS54-203ENST00000409558 CACNB2Q08289 660 aaPredicted RBP13.9□□□□□ -0.18
VPS54-203ENST00000409558 ARID3BQ8IVW6 561 aaPredicted RBP13.9□□□□□ -0.18
VPS54-203ENST00000409558 NDUFAF2Q8N183 169 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 NSMCE1Q8WV22 266 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 TSSK1BQ9BXA7 367 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 SNAI1O95863 264 aaPredicted RBP13.9□□□□□ -0.18
VPS54-203ENST00000409558 PROZP22891 400 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 SULT1E1P49888 294 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 SLC10A2Q12908 348 aaPredicted RBP13.9□□□□□ -0.18
VPS54-203ENST00000409558 TFDP2Q14188 446 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 DEFB106AQ8N104 65 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 AGGF1Q8N302 714 aaeCLIP13.9□□□□□ -0.182e-11■■■□□ 19
VPS54-203ENST00000409558 HIPK4Q8NE63 616 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 TTC8Q8TAM2 541 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 C16orf70Q9BSU1 422 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 RXFP1Q9HBX9 757 aa13.9□□□□□ -0.18
VPS54-203ENST00000409558 DRG1Q9Y295 367 aaKnown RBP13.9□□□□□ -0.18
VPS54-203ENST00000409558 WDR27A2RRH5 827 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 CXCL11O14625 94 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 BEST1O76090 585 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 ANP32DO95626 131 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 PFKMP08237 780 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 MCF2P10911 925 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 TPH1P17752 444 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 XRCC4Q13426 336 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 TNFAIP8L3Q5GJ75 292 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 LRRC38Q5VT99 294 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 HEATR6Q6AI08 1181 aaKnown RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 POLNQ7Z5Q5 900 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 ANKLE1Q8NAG6 615 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 NCAPGQ9BPX3 1015 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 BCO2Q9BYV7 579 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 SLC12A4Q9UP95 1085 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 LGR5O75473 907 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 TROVE2P10155 538 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS54-203ENST00000409558 MLH1P40692 756 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 HDAC4P56524 1084 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 ALYREFQ86V81 257 aaKnown RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 WDR35Q9P2L0 1181 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 NUMBLQ9Y6R0 609 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms