RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SERPINB3P29508 390 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 ADCYAP1R1P41586 468 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 OCRLQ01968 901 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 KLC1Q07866 573 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 LRRC36Q1X8D7 754 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 COLGALT1Q8NBJ5 622 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 TFAP2BQ92481 460 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 PARK7Q99497 189 aaKnown RBP19.18■□□□□ 0.66
USP48-204ENST00000400301 PFDN6O15212 129 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 GLRA3O75311 464 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 C12orf29Q8N999 325 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 TTC8Q8TAM2 541 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 SCG3Q8WXD2 468 aaKnown RBP19.18■□□□□ 0.66
USP48-204ENST00000400301 RNF157Q96PX1 679 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 APOL2Q9BQE5 337 aa19.18■□□□□ 0.66
USP48-204ENST00000400301 PDGFDQ9GZP0 370 aaPredicted RBP19.18■□□□□ 0.66
USP48-204ENST00000400301 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.18■□□□□ 0.66
USP48-204ENST00000400301 IQCA1LA6NCM1 817 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 AP1G2O75843 785 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 UNC5CO95185 931 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 CDKN2BP42772 138 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 RNF43Q68DV7 783 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 TSC22D3Q99576 134 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 NAT9Q9BTE0 207 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 SLC39A10Q9ULF5 831 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 CALB2P22676 271 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 ADORA2AP29274 412 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 RPL10AP62906 217 aaKnown RBP19.17■□□□□ 0.66
USP48-204ENST00000400301 TEX9Q8N6V9 391 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 LRRN4Q8WUT4 740 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 PAPPAQ13219 1627 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 CYB561D2O14569 222 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 TRPA1O75762 1119 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 SLC27A1Q6PCB7 646 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 AGAP11Q8TF27 550 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 NKD2Q969F2 451 aaPredicted RBP19.17■□□□□ 0.66
USP48-204ENST00000400301 TRIM56Q9BRZ2 755 aaKnown RBP19.17■□□□□ 0.66
USP48-204ENST00000400301 DONSONQ9NYP3 566 aa19.17■□□□□ 0.66
USP48-204ENST00000400301 B4GALT4O60513 344 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 APOEP02649 317 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 PAPOLAP51003 745 aaKnown RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 GPR20Q99678 358 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 SPON1Q9HCB6 807 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 HES2Q9Y543 173 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 FCHO1O14526 889 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 NOL3O60936 208 aaKnown RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 ZNF189O75820 626 aaPredicted RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 ACAT1P24752 427 aaKnown RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 PCSK1P29120 753 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 ICAM3P32942 547 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 NCALDP61601 193 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 MOB2Q70IA6 237 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 CCNJLQ8IV13 435 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 ATPAF2Q8N5M1 289 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 IPMKQ8NFU5 416 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 SLC2A14Q8TDB8 520 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 SNRNP25Q9BV90 132 aaKnown RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 DCLRE1BQ9H816 532 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 SLC38A7Q9NVC3 462 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 DNAJC16Q9Y2G8 782 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 NHSL1Q5SYE7 1610 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 ERBB2P04626 1255 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 PRAMEP78395 509 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 ZC3H12AQ5D1E8 599 aaKnown RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 C1orf220Q5T0J3 134 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 ZBTB10Q96DT7 871 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 ARMCX1Q9P291 453 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 ALADP13716 330 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 XRCC4Q13426 336 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 MAP7Q14244 749 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 LACTB2Q53H82 288 aaPredicted RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 SPOUT1Q5T280 376 aaKnown RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 ST13P4Q8IZP2 240 aaPredicted RBP19.16■□□□□ 0.66
USP48-204ENST00000400301 C7orf43Q8WVR3 580 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 HTR3CQ8WXA8 447 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 PTPRN2Q92932 1015 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 PDGFCQ9NRA1 345 aa19.16■□□□□ 0.66
USP48-204ENST00000400301 MTSS1O43312 755 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 ECHS1P30084 290 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 ADIGQ0VDE8 80 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 EFTUD2Q15029 972 aaKnown RBP eCLIP19.15■□□□□ 0.664e-7■■■□□ 14.8
USP48-204ENST00000400301 NT5DC4Q86YG4 428 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 EFHD1Q9BUP0 239 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 LHX5Q9H2C1 402 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 ETNK2Q9NVF9 386 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 DDX60Q8IY21 1712 aaKnown RBP19.15■□□□□ 0.66
USP48-204ENST00000400301 TNPO2O14787 897 aaKnown RBP19.15■□□□□ 0.66
USP48-204ENST00000400301 CCDC130P13994 396 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 ZNF280AP59817 542 aaPredicted RBP19.15■□□□□ 0.66
USP48-204ENST00000400301 DEFB106AQ8N104 65 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 PIP4K2CQ8TBX8 421 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 PPP1R13LQ8WUF5 828 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 KATNAL1Q9BW62 490 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 ADA2Q9NZK5 511 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 BTBD7Q9P203 1132 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 KCNK1O00180 336 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 VHLP40337 213 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 MAP3K7CLP57077 242 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 ENPEPQ07075 957 aa19.15■□□□□ 0.66
USP48-204ENST00000400301 TAF1CQ15572 869 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms