RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 MBD1Q9UIS9 605 aaPredicted RBP30.15■■■□□ 2.42
HMGB1-205ENST00000399494 FAM92AA1XBS5 289 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 CETN3O15182 167 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 CLSTN1O94985 981 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 C4BPAP04003 597 aaKnown RBP30.14■■■□□ 2.42
HMGB1-205ENST00000399494 ZDHHC11BP0C7U3 371 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 SH3PXD2AQ5TCZ1 1133 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 KLHL10Q6JEL2 608 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 INTS8Q75QN2 995 aaKnown RBP30.14■■■□□ 2.42
HMGB1-205ENST00000399494 LPCAT2Q7L5N7 544 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 ETFBKMTQ8IXQ9 262 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 NAT16Q8N8M0 369 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 TMC2Q8TDI7 906 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 WBP2Q969T9 261 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 ELMO3Q96BJ8 720 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 DHTKD1Q96HY7 919 aaPredicted RBP30.14■■■□□ 2.42
HMGB1-205ENST00000399494 DUSP9Q99956 384 aaKnown RBP30.14■■■□□ 2.42
HMGB1-205ENST00000399494 SDCBP2Q9H190 292 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 CLSTN2Q9H4D0 955 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 COMMD8Q9NX08 183 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 EVLQ9UI08 416 aaPredicted RBP30.14■■■□□ 2.42
HMGB1-205ENST00000399494 ATP8B3O60423 1300 aa30.14■■■□□ 2.42
HMGB1-205ENST00000399494 MAP3K13O43283 966 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 VAMP7P51809 220 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 SLC5A3P53794 718 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 LRRC63Q05C16 580 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 ZNF699Q32M78 642 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 MAP7D1Q3KQU3 841 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 ZNF667Q5HYK9 610 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 TRIML1Q8N9V2 468 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 TNIP3Q96KP6 325 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 DMAP1Q9NPF5 467 aaPredicted RBP30.13■■■□□ 2.41
HMGB1-205ENST00000399494 SH3BP1Q9Y3L3 701 aa30.13■■■□□ 2.41
HMGB1-205ENST00000399494 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 TRIM49BA6NDI0 452 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 VNN1O95497 513 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 EPB41P11171 864 aaKnown RBP30.12■■■□□ 2.41
HMGB1-205ENST00000399494 CSRP1P21291 193 aaKnown RBP30.12■■■□□ 2.41
HMGB1-205ENST00000399494 TUBP50607 506 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 DLG4P78352 724 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 ANKRD40Q6AI12 368 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 BBS7Q8IWZ6 715 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 TMEFF1Q8IYR6 380 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 FUKQ8N0W3 1084 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 HMGB4Q8WW32 186 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 EEF2KMTQ96G04 330 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 SMARCD1Q96GM5 515 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 SPACA7Q96KW9 195 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 NUP62CLQ9H1M0 184 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 SPHK2Q9NRA0 654 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 TMEM74BQ9NUR3 256 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 GMIPQ9P107 970 aa30.12■■■□□ 2.41
HMGB1-205ENST00000399494 BCCIPQ9P287 314 aaKnown RBP eCLIP30.12■■■□□ 2.41
HMGB1-205ENST00000399494 FRYQ5TBA9 3013 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 TBC1D3BA6NDS4 549 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 HOXC11O43248 304 aaPredicted RBP30.11■■■□□ 2.41
HMGB1-205ENST00000399494 CEACAM1P13688 526 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 CD44P16070 742 aaKnown RBP30.11■■■□□ 2.41
HMGB1-205ENST00000399494 PTGER3P43115 390 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 PGFP49763 221 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 FKBP3Q00688 224 aaKnown RBP30.11■■■□□ 2.41
HMGB1-205ENST00000399494 NCOA4Q13772 614 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 BTBD8Q5XKL5 378 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 ACOT1Q86TX2 421 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 TMEM25Q86YD3 366 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 ZMIZ2Q8NF64 920 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 KCNV2Q8TDN2 545 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 SMOQ99835 787 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 WASF3Q9UPY6 502 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 CEP295Q9C0D2 2601 aa30.11■■■□□ 2.41
HMGB1-205ENST00000399494 CFAP47Q6ZTR5 3102 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 TULP3O75386 442 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 AP1G2O75843 785 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 BEST1O76090 585 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 PROS1P07225 676 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 BMP6P22004 513 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 PMS1P54277 932 aaKnown RBP30.1■■■□□ 2.41
HMGB1-205ENST00000399494 ZNF252P-AS1Q0IIN9 211 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 BYSLQ13895 437 aaKnown RBP30.1■■■□□ 2.41
HMGB1-205ENST00000399494 TRIM61Q5EBN2 209 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 SPDYCQ5MJ68 293 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 SCARA5Q6ZMJ2 495 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 SYT12Q8IV01 421 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 DEC1Q9P2X7 70 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 HCN2Q9UL51 889 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 CTNND2Q9UQB3 1225 aa30.1■■■□□ 2.41
HMGB1-205ENST00000399494 TCRBV21S2A2A0A5A6 115 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 BICDL2A1A5D9 508 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 IKBKBO14920 756 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 ARMCX6Q7L4S7 300 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 CRYBG2Q8N1P7 616 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 PGBD3Q8N328 593 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 NELFBQ8WX92 580 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 CSNK1G1Q9HCP0 422 aa30.09■■■□□ 2.41
HMGB1-205ENST00000399494 PPP1R3GB7ZBB8 358 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 LMAN2Q12907 356 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 SGSM1Q2NKQ1 1148 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 ANO4Q32M45 955 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 UAP1L1Q3KQV9 507 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 PREPLQ4J6C6 727 aaPredicted RBP30.08■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms