RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 THG1LQ9NWX6 298 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 TPX2Q9ULW0 747 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PCDHGC5Q9Y5F6 944 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PCDHA3Q9Y5H8 950 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 MIPP30301 263 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 HOXD13P35453 343 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 IFNAR2P48551 515 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PAPOLAP51003 745 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 RAD23BP54727 409 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 MMGT1Q8N4V1 131 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 LZTR1Q8N653 840 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 ANKLE1Q8NAG6 615 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PRDM16Q9HAZ2 1276 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PCDHGC3Q9UN70 934 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PHF24Q9UPV7 400 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 COL4A5P29400 1685 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 F5H423 210 aaPredicted RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 KRT38O76015 456 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 TRUB2O95900 331 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 MMP8P22894 467 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 RFC1P35251 1148 aaPredicted RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PMS2P54278 862 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 OXCT1P55809 520 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 PRAMEP78395 509 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 MRPS5P82675 430 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 ADCY1Q08828 1119 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 MOGSQ13724 837 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 CASP8Q14790 479 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 LRRC38Q5VT99 294 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 SLC39A5Q6ZMH5 540 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 MON1AQ86VX9 555 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 ZBED8Q8IZ13 594 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 AGAP3Q96P47 875 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 TMEM175Q9BSA9 504 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 IGFLR1Q9H665 355 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 APOBEC3GQ9HC16 384 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 SMPD4Q9NXE4 827 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 SLC27A5Q9Y2P5 690 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 NRXN2Q9P2S2 1712 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 CLDN5O00501 218 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 GPR32O75388 356 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 ERBB2P04626 1255 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 JAM2P57087 298 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 TMED2Q15363 201 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 VARS2Q5ST30 1063 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 SDE2Q6IQ49 451 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 ZNF662Q6ZS27 426 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 NT5DC3Q86UY8 548 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 HNRNPABQ99729 332 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 UBE2OQ9C0C9 1292 aaKnown RBP8.59□□□□□ -1.03
PTPRD-204ENST00000397606 HSD3B7Q9H2F3 369 aa8.59□□□□□ -1.03
PTPRD-204ENST00000397606 NCANO14594 1321 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 CES2O00748 559 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ZNF623O75123 536 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ANXA9O76027 345 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 SEC31AO94979 1220 aaKnown RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 VNN1O95497 513 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 RHOCP08134 193 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 CYP2F1P24903 491 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 KCNJ1P48048 391 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 CLCN6P51797 869 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 CCNG2Q16589 344 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 FAM71DQ8N9W8 422 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 FBXO22Q8NEZ5 403 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ADAM32Q8TC27 787 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 MGARPQ8TDB4 240 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 PPP4R1Q8TF05 950 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ZNF516Q92618 1163 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ERP44Q9BS26 406 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 FAM129AQ9BZQ8 928 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ZMYND15Q9H091 742 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 UPF3AQ9H1J1 476 aaKnown RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 SMARCAL1Q9NZC9 954 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 DNMT3LQ9UJW3 386 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 A0A087WUV0 522 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TTLL13PA6NNM8 815 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 S100BP04271 92 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TGM2P21980 687 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 IGFBP4P22692 258 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 OTUD4Q01804 1114 aaKnown RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 DUSP4Q13115 394 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 POLD3Q15054 466 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 DDR2Q16832 855 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 NAPEPLDQ6IQ20 393 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 TAS1R3Q7RTX0 852 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ZNF557Q8N988 423 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 SLC4A11Q8NBS3 891 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 USP13Q92995 863 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 BHMTQ93088 406 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 FAM118BQ9BPY3 351 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 C11orf84Q9BUA3 381 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 CINPQ9BW66 212 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 CYLDQ9NQC7 956 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 KIAA1551Q9HCM1 1747 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 FDFT1P37268 417 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 MATKP42679 507 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 SLCO1A2P46721 670 aa8.58□□□□□ -1.04
PTPRD-204ENST00000397606 SDCCAG8Q86SQ7 713 aaPredicted RBP8.58□□□□□ -1.04
PTPRD-204ENST00000397606 ZC3H3Q8IXZ2 948 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms