RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NAT9Q9BTE0 207 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TBCDQ9BTW9 1192 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SETD4Q9NVD3 440 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ADGRG1Q9Y653 693 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CFAP73A6NFT4 308 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TRIM49D1C9J1S8 452 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PDHXO00330 501 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TIMM44O43615 452 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 STRNO43815 780 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ZNF682O95780 498 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 IGSF6O95976 241 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 GNRH1P01148 92 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PABPC1P11940 636 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 COMTP21964 271 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CCR1P32246 355 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 MAGEA4P43358 317 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PLOD1Q02809 727 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 STX4Q12846 297 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TOB2Q14106 344 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 INSCQ1MX18 579 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CCDC144BQ3MJ40 725 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 FBXO47Q5MNV8 452 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SRLQ86TD4 932 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 LRRC6Q86X45 466 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CBWD2Q8IUF1 395 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CCNJLQ8IV13 435 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CYP4Z2PQ8N1L4 340 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TMEM199Q8N511 208 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SOCS4Q8WXH5 440 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 REXO5Q96IC2 774 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 SERPINB12Q96P63 405 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SYT15Q9BQS2 421 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 RBM22Q9NW64 420 aaKnown RBP eCLIP7.41□□□□□ -1.22
UPF2-203ENST00000397053 SPG21Q9NZD8 308 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 MCM8Q9UJA3 840 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TIMM13Q9Y5L4 95 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 ERI2A8K979 691 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 B2RBV5 119 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PAICSP22234 425 aaKnown RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 RAB14P61106 215 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ORC1Q13415 861 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 MKRN4PQ13434 485 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 NR6A1Q15406 480 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 KYNUQ16719 465 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SETMARQ53H47 684 aaPredicted RBP7.41□□□□□ -1.22
UPF2-203ENST00000397053 TCEAL5Q5H9L2 206 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TRAPPC5Q8IUR0 188 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 USP7Q93009 1102 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ERLEC1Q96DZ1 483 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PLEKHF1Q96S99 279 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 ACOX2Q99424 681 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SH3GL1Q99961 368 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 CAAP1Q9H8G2 361 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 SLC28A3Q9HAS3 691 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 PSME2Q9UL46 239 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 TBX20Q9UMR3 447 aa7.41□□□□□ -1.22
UPF2-203ENST00000397053 hCG_2014768A0A024R1R8 64 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CYP2A6P11509 494 aaPredicted RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 ZNF7P17097 686 aaPredicted RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 RASA1P20936 1047 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 MMRN1Q13201 1228 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CUL2Q13617 745 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 LONRF1Q17RB8 773 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 TTC39BQ5VTQ0 682 aaPredicted RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 C16orf86Q6ZW13 317 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 PPIL6Q8IXY8 311 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 FAM120BQ96EK7 910 aaKnown RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 PPP1R16AQ96I34 528 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 FDXACB1Q9BRP7 624 aaPredicted RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 TRIM51Q9BSJ1 452 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 MTMR12Q9C0I1 747 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 LRRC40Q9H9A6 602 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CYP4F12Q9HCS2 524 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 AVENQ9NQS1 362 aaPredicted RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 KLHL3Q9UH77 587 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 DCDC2Q9UHG0 476 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 DBR1Q9UK59 544 aaKnown RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 PITPNM2Q9BZ72 1349 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CNTNAP2Q9UHC6 1331 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 SSU72P8A0A1W2PR75 194 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 PHF20L1A8MW92 1017 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 USP1O94782 785 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 PNMA6AP0CW24 399 aaPredicted RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 ITGB6P18564 788 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 PSMA4P25789 261 aaKnown RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 CTNNB1P35222 781 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CCT8P50990 548 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 TKTL1P51854 596 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 TBX4P57082 545 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 C1DQ13901 141 aaKnown RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 ACAP2Q15057 778 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CYP2A13Q16696 494 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CCDC149Q6ZUS6 474 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 DENND5BQ6ZUT9 1274 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 NLRP14Q86W24 1093 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 GATAD2AQ86YP4 633 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 CXorf40BQ96DE9 158 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 ABHD16BQ9H3Z7 469 aa7.4□□□□□ -1.22
UPF2-203ENST00000397053 DDX43Q9NXZ2 648 aaKnown RBP7.4□□□□□ -1.22
UPF2-203ENST00000397053 PLXNC1O60486 1568 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms