RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 E2F8A0AVK6 867 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 FAM228BP0C875 321 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 CEBPBP17676 345 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 NOS2P35228 1153 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 CXCR3P49682 368 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 YWHAGP61981 247 aaKnown RBP eCLIP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ZXDBP98169 803 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 CYP27A1Q02318 531 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 KLHL30Q0D2K2 578 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF252P-AS1Q0IIN9 211 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MAMLD1Q13495 774 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MPP7Q5T2T1 576 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 CACNA2D4Q7Z3S7 1137 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 LRRC8AQ8IWT6 810 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MSANTD4Q8NCY6 345 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 FCRL2Q96LA5 508 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-202ENST00000394943 MYADMQ96S97 322 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 SLC46A2Q9BY10 475 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 NLRC4Q9NPP4 1024 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 FAM49BQ9NUQ9 324 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF212Q9UDV6 495 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 SLC27A5Q9Y2P5 690 aa7.36□□□□□ -1.23
LIMA1-202ENST00000394943 E5RJQ4 531 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 C2CD2LO14523 706 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 PCK1P35558 622 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 GRIK1P39086 918 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 EIF2DP41214 584 aaKnown RBP7.35□□□□□ -1.23
LIMA1-202ENST00000394943 TKTL1P51854 596 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 SLC8A3P57103 927 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 RBM10P98175 930 aaKnown RBP7.35□□□□□ -1.23
LIMA1-202ENST00000394943 TNK2Q07912 1038 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 RAPGEF1Q13905 1077 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 SLC25A52Q3SY17 297 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 BRMS1LQ5PSV4 323 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 ATAT1Q5SQI0 421 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 OTOP3Q7RTS5 596 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 TMC6Q7Z403 805 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 PHTF2Q8N3S3 785 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 SMG7Q92540 1137 aaKnown RBP7.35□□□□□ -1.23
LIMA1-202ENST00000394943 FATE1Q969F0 183 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 C18orf8Q96DM3 657 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 ADAM33Q9BZ11 813 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 RANBP2P49792 3224 aaKnown RBP7.35□□□□□ -1.23
LIMA1-202ENST00000394943 PRRG1O14668 218 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 LTFP02788 710 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 USP17L7P0C7H9 530 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 KRT5P13647 590 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 PTPN7P35236 360 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 ZNF143P52747 638 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-202ENST00000394943 C11orf63Q6NUN7 778 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 MFSD6LQ8IWD5 586 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 SCAMP5Q8TAC9 235 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 TSC1Q92574 1164 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 CD101Q93033 1021 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 NOX5Q96PH1 765 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 FAM83CQ9BQN1 747 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 ULBP1Q9BZM6 244 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 TAS2R14Q9NYV8 317 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 GMIPQ9P107 970 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 CALCOCO1Q9P1Z2 691 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 PPARGC1AQ9UBK2 798 aaKnown RBP7.35□□□□□ -1.23
LIMA1-202ENST00000394943 SCINQ9Y6U3 715 aa7.35□□□□□ -1.23
LIMA1-202ENST00000394943 DRGXA6NNA5 263 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 YJEFN3A6XGL0 299 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 E7ENQ6 273 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CCL16O15467 120 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 IRAK2O43187 625 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 HOXC11O43248 304 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 COCHO43405 550 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 ADORA2BP29275 332 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 EIF4A3P38919 411 aaKnown RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 PLCB2Q00722 1185 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 TAF10Q12962 218 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 ORC1Q13415 861 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 MTMR3Q13615 1198 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 MGAT5BQ3V5L5 792 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 RARS2Q5T160 578 aaKnown RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 LRRC38Q5VT99 294 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 TOGARAM2Q6ZUX3 1019 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 RIN3Q8TB24 985 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 ITFG1Q8TB96 612 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 TEKT4Q8WW24 435 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 SMARCD2Q92925 531 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 FAF2Q96CS3 445 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CHFRQ96EP1 664 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 HAPLN3Q96S86 360 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CHP1Q99653 195 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 OSBPL2Q9H1P3 480 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 HCFC1R1Q9NWW0 138 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CLDND1Q9NY35 253 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CEP83Q9Y592 693 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 PENKP01210 267 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 PLEKP08567 350 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 HCAR3P49019 387 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 ADIGQ0VDE8 80 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CES5AQ6NT32 575 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 RAD9BQ6WBX8 426 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 SUGP1Q8IWZ8 645 aaKnown RBP7.34□□□□□ -1.23
LIMA1-202ENST00000394943 ARFGAP1Q8N6T3 406 aa7.34□□□□□ -1.23
LIMA1-202ENST00000394943 CELF5Q8N6W0 485 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms