RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 YWHAGP61981 247 aaKnown RBP eCLIP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 MLLT1Q03111 559 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 BMT2Q1RMZ1 405 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 FAM35AQ86V20 835 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 EFHBQ8N7U6 833 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SMG8Q8ND04 991 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SLC22A17Q8WUG5 538 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 N4BP2L2Q92802 583 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 TRIM7Q9C029 511 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SLC8A2Q9UPR5 921 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 A8MX80 341 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 H0YGN5 161 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 CBX4O00257 560 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 EFCAB14O75071 495 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 RFPL2O75678 378 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 MYZAPP0CAP1 466 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 MDH1P40925 334 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 RPL7AP62424 266 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SMAD3P84022 425 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 GCNT1Q02742 428 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SHHQ15465 462 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 NAB2Q15742 525 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 ATP13A4Q4VNC1 1196 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 EPM2AIP1Q7L775 607 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SLC9A9Q8IVB4 645 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 RHOT1Q8IXI2 618 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 KREMEN2Q8NCW0 462 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 KLHDC9Q8NEP7 349 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 TFAP2BQ92481 460 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 RMDN1Q96DB5 314 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 ATP6V1G3Q96LB4 118 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 C11orf84Q9BUA3 381 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 C10orf88Q9H8K7 445 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 CAPN6Q9Y6Q1 641 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 DDX60LQ5H9U9 1706 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 A0A1W2PRU2 124 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 RBM47A0AV96 593 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 PGRMC1O00264 195 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 EEF2KO00418 725 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 CST8O60676 142 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 GALTP07902 379 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 RFC1P35251 1148 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 WASP42768 502 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 NFIL3Q16649 462 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SOWAHAQ2M3V2 549 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 CFAP52Q8N1V2 620 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 ARHGEF26Q96DR7 871 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 HAPLN2Q9GZV7 340 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SMG9Q9H0W8 520 aaKnown RBP10.72□□□□□ -0.69
COL6A3-205ENST00000392004 UBP1Q9NZI7 540 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 SNX24Q9Y343 169 aa10.72□□□□□ -0.69
COL6A3-205ENST00000392004 TLR5O60602 858 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 ACADSBP45954 432 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 CYP4F8P98187 520 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 ACTN3Q08043 901 aaPredicted RBP10.71□□□□□ -0.69
COL6A3-205ENST00000392004 YTHDF3Q7Z739 585 aaKnown RBP10.71□□□□□ -0.69
COL6A3-205ENST00000392004 DENND1CQ8IV53 801 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 WHAMMQ8TF30 809 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 ATG4AQ8WYN0 398 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 USP6NLQ92738 828 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 RAD9AQ99638 391 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 ERVK-5Q9HDB9 667 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 PDLIM7Q9NR12 457 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 TLR8Q9NR97 1041 aaKnown RBP10.71□□□□□ -0.69
COL6A3-205ENST00000392004 RBM12Q9NTZ6 932 aaKnown RBP10.71□□□□□ -0.69
COL6A3-205ENST00000392004 SIK3Q9Y2K2 1263 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 CENPFP49454 3210 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 IFNAR2P48551 515 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 SEC24CP53992 1094 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 ZNF235Q14590 738 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 ZCWPW2Q504Y3 356 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 C9orf50Q5SZB4 431 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 PPP1R14CQ8TAE6 165 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 MYCBPAPQ8TBZ2 947 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 FBXL5Q9UKA1 691 aa10.71□□□□□ -0.69
COL6A3-205ENST00000392004 PARNO95453 639 aaKnown RBP10.71□□□□□ -0.7
COL6A3-205ENST00000392004 LTFP02788 710 aa10.71□□□□□ -0.7
COL6A3-205ENST00000392004 CFHP08603 1231 aa10.71□□□□□ -0.7
COL6A3-205ENST00000392004 CARSP49589 748 aaKnown RBP10.71□□□□□ -0.7
COL6A3-205ENST00000392004 APOL2Q9BQE5 337 aa10.71□□□□□ -0.7
COL6A3-205ENST00000392004 KCNK9Q9NPC2 374 aa10.71□□□□□ -0.7
COL6A3-205ENST00000392004 PIH1D1Q9NWS0 290 aaKnown RBP10.71□□□□□ -0.7
COL6A3-205ENST00000392004 SAE1Q9UBE0 346 aaPredicted RBP10.71□□□□□ -0.7
COL6A3-205ENST00000392004 VPS28Q9UK41 221 aa10.71□□□□□ -0.7
COL6A3-205ENST00000392004 ADGRA2Q96PE1 1338 aa10.71□□□□□ -0.7
COL6A3-205ENST00000392004 FRMD3A2A2Y4 597 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 TRIM43BA6NCK2 446 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 VNN1O95497 513 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 FAM107AO95990 144 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 KRT7P08729 469 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CLNS1AP54105 237 aaKnown RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 ST8SIA6P61647 398 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 PCBP1Q15365 356 aaKnown RBP eCLIP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 GPR158Q5T848 1215 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CRELD2Q6UXH1 353 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-205ENST00000392004 CPLX4Q7Z7G2 160 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 ITIH5Q86UX2 942 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 HERC6Q8IVU3 1022 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 PALM2Q8IXS6 379 aa10.7□□□□□ -0.7
COL6A3-205ENST00000392004 LRRC52Q8N7C0 313 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms