RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 MYOZ2Q9NPC6 264 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 HEY2Q9UBP5 337 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 STARD13Q9Y3M8 1113 aa13.18□□□□□ -0.3
CCDC88C-204ENST00000389857 TMEM114B3SHH9 223 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 POU1F1P28069 291 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 HSD17B3P37058 310 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 NAMPTP43490 491 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 CCZ1BP86790 482 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 CCZ1P86791 482 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 SLC44A4Q53GD3 710 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 SHCBP1LQ9BZQ2 653 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 CARD9Q9H257 536 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 GTF3C4Q9UKN8 822 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 CYB561D2O14569 222 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 RHOCP08134 193 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 PABPC1P11940 636 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 CYP2A7P20853 494 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 RENBPP51606 427 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 STK4Q13043 487 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 AMHR2Q16671 573 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 BHMTQ93088 406 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 ZNF518BQ9C0D4 1074 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 SPON1Q9HCB6 807 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 URODP06132 367 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 CALB2P22676 271 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 KLK7P49862 253 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 PLIN5Q00G26 463 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 MKRN4PQ13434 485 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 FBXO36Q8NEA4 188 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 RNFT2Q96EX2 444 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 SNX13Q9Y5W8 968 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 H7C0S8 307 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 STAU1O95793 577 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 FXR1P51114 621 aaKnown RBP eCLIP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 STRA8Q7Z7C7 330 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 ZC3H11AO75152 810 aaKnown RBP eCLIP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 KCNJ1P48048 391 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 TRIM25Q14258 630 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 INAQ16352 499 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 ATAD3BQ5T9A4 648 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 ELOVL6Q9H5J4 265 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 GGA3Q9NZ52 723 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 SNX8Q9Y5X2 465 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 TPST1O60507 370 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 TPBGLP0DKB5 382 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 MAPK7Q13164 816 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 RTL3Q8N8U3 475 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 TARS2Q9BW92 718 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 RERGLQ9H628 205 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 GPRC5DQ9NZD1 345 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 KLK14Q9P0G3 267 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 PCDHGA4Q9Y5G9 962 aa13.17□□□□□ -0.3
CCDC88C-204ENST00000389857 MSH3P20585 1137 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TRAF2Q12933 501 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TMEM26Q6ZUK4 368 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 CCDC149Q6ZUS6 474 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 ATG16L2Q8NAA4 619 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 STK39Q9UEW8 545 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TAGLN3Q9UI15 199 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 NCAM2O15394 837 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 HIRAP54198 1017 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 MPZL3Q6UWV2 235 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 EPHX4Q8IUS5 362 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 ANKRD13AQ8IZ07 590 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 AGPAT3Q9NRZ7 376 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 VPS28Q9UK41 221 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 MAGEB16A2A368 324 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 NOS3P29474 1203 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 HALP42357 657 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 RHOAP61586 193 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 KDM7AQ6ZMT4 941 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 THAP2Q9H0W7 228 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TRPC4Q9UBN4 977 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 KDM6BO15054 1643 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 SMIM22K7EJ46 135 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 OGTO15294 1046 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TBC1D12O60347 775 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 FLT3P36888 993 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TSNQ15631 228 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 CNGA2Q16280 664 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 CCDC157Q569K6 752 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TRIQKQ629K1 86 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 CLYBLQ8N0X4 340 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 KCNB2Q92953 911 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 REPS1Q96D71 796 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 PACSIN1Q9BY11 444 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 FHDC1Q9C0D6 1143 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 SLITRK2Q9H156 845 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 DCDC2CA8MYV0 355 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 HSMCR30P0CW71 290 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 RAD23AP54725 363 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 GRIK3Q13003 919 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TYW3Q6IPR3 259 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 STYK1Q6J9G0 422 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 ACSF2Q96CM8 615 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 JMJD4Q9H9V9 463 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 NOD2Q9HC29 1040 aa13.16□□□□□ -0.3
CCDC88C-204ENST00000389857 TLR8Q9NR97 1041 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms