RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ATPIF1Q9UII2 106 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PCDHGA3Q9Y5H0 932 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 CBX5P45973 191 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 DCAF6Q58WW2 860 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 TFDP3Q5H9I0 405 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 BICRALQ6AI39 1079 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PHACTR4Q8IZ21 702 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 SLITRK1Q96PX8 696 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 NT5C1AQ9BXI3 368 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 FAUP35544 74 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 NAB2Q15742 525 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 EIF2S3LQ2VIR3 472 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ARHGEF19Q8IW93 802 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 CHCHD6Q9BRQ6 235 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 TMEM117Q9H0C3 514 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 BARHL2Q9NY43 387 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 RPS6KL1Q9Y6S9 549 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 CDC42BPGQ6DT37 1551 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF879B4DU55 563 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 STIP1P31948 543 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 OR6Y1Q8NGX8 325 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 SLC9A6Q92581 669 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PROX1Q92786 737 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 EIF2AK1Q9BQI3 630 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 EPB41L4AQ9HCS5 686 aaPredicted RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 FDX1P10109 184 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 AP1S1P61966 158 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 NEDD8Q15843 81 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PIK3C3Q8NEB9 887 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PCNAP12004 261 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 FCER1AP12319 257 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 MYBPC2Q14324 1141 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ARID5BQ14865 1188 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 HAUS6Q7Z4H7 955 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 DDX18Q9NVP1 670 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 MCUBQ9NWR8 336 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PTCH1Q13635 1447 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 LYNP07948 512 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 CACNA2D1P54289 1103 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 TXNRD1Q16881 649 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 CCNI2Q6ZMN8 369 aaPredicted RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 OR52L1Q8NGH7 329 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 KATNAL1Q9BW62 490 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 C8orf4Q9NR00 106 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 RNASEH1O60930 286 aaKnown RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 ALDH1A3P47895 512 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 CACNB2Q08289 660 aaPredicted RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 ALG11Q2TAA5 492 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 ARHGAP15Q53QZ3 475 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 PALB2Q86YC2 1186 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 C9orf72Q96LT7 481 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 ADGRE3Q9BY15 652 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 MUTP22033 750 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 FMO5P49326 533 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 XRCC4Q13426 336 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 EFR3AQ14156 821 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 SMYD1Q8NB12 490 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 MTIF3Q9H2K0 278 aaKnown RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 CRTAMO95727 393 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 NCOA4Q13772 614 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 LRRC74BQ6ZQY2 392 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 SLC25A41Q8N5S1 370 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 RIN2Q8WYP3 895 aaPredicted RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 MTA3Q9BTC8 594 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 CCDC154A6NI56 674 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 SDR42E2A6NKP2 422 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 E2F8A0AVK6 867 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 HAT1O14929 419 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 ADHFE1Q8IWW8 467 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF184Q99676 751 aaPredicted RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 TRIT1Q9H3H1 467 aaKnown RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 SCUBE2Q9NQ36 999 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 KCNH4Q9UQ05 1017 aa11.96□□□□□ -0.49
VPS13A-205ENST00000376636 RUVBL2Q9Y230 463 aaKnown RBP11.96□□□□□ -0.49
VPS13A-205ENST00000376636 MAGEA2P43356 314 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 USP38Q8NB14 1042 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 HPS3Q969F9 1004 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 RBM12Q9NTZ6 932 aaKnown RBP11.96□□□□□ -0.5
VPS13A-205ENST00000376636 DRG1Q9Y295 367 aaKnown RBP11.96□□□□□ -0.5
VPS13A-205ENST00000376636 TPD52L3Q96J77 140 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 PIN4Q9Y237 131 aaKnown RBP11.96□□□□□ -0.5
VPS13A-205ENST00000376636 A0A1W2PQJ5 194 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 MDM4O15151 490 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 ABATP80404 500 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 SWI5Q1ZZU3 235 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 PDPK2PQ6A1A2 396 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 HNRNPLLQ8WVV9 542 aaKnown RBP11.96□□□□□ -0.5
VPS13A-205ENST00000376636 DGCR14Q96DF8 476 aaKnown RBP11.96□□□□□ -0.5
VPS13A-205ENST00000376636 MMP19Q99542 508 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 PRKD2Q9BZL6 878 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 MROH7Q68CQ1 1323 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 REREQ9P2R6 1566 aa11.96□□□□□ -0.5
VPS13A-205ENST00000376636 GCLCP48506 637 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 C1QTNF1Q9BXJ1 281 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 TRPC4Q9UBN4 977 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 LDLRP01130 860 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 GPD1P21695 349 aa11.95□□□□□ -0.5
VPS13A-205ENST00000376636 SSTR3P32745 418 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-205ENST00000376636 RPS6KA3P51812 740 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms