RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 APRTP07741 180 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 OSBPP22059 807 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 GSTA3Q16772 222 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 DNAL1Q4LDG9 190 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 ZPBP2Q6X784 338 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 RAPH1Q70E73 1250 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 REPS2Q8NFH8 660 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 ZFAND2BQ8WV99 257 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 SDCBP2Q9H190 292 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 USP29Q9HBJ7 922 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 GPATCH2LQ9NWQ4 482 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 PDP2Q9P2J9 529 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 ZNF180Q9UJW8 692 aa17.01■□□□□ 0.31
SDC4-201ENST00000372733 COL11A1P12107 1806 aaPredicted RBP17.01■□□□□ 0.31
SDC4-201ENST00000372733 OGTO15294 1046 aa17■□□□□ 0.31
SDC4-201ENST00000372733 KRT19P08727 400 aa17■□□□□ 0.31
SDC4-201ENST00000372733 AP2B1P63010 937 aa17■□□□□ 0.31
SDC4-201ENST00000372733 CDO1Q16878 200 aa17■□□□□ 0.31
SDC4-201ENST00000372733 C15orf59Q2T9L4 293 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 MROH9Q5TGP6 573 aa17■□□□□ 0.31
SDC4-201ENST00000372733 TRNP1Q6NT89 227 aa17■□□□□ 0.31
SDC4-201ENST00000372733 CDR2LQ86X02 465 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 NDUFAF2Q8N183 169 aa17■□□□□ 0.31
SDC4-201ENST00000372733 CEP120Q8N960 986 aa17■□□□□ 0.31
SDC4-201ENST00000372733 TRAF3IP1Q8TDR0 691 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 PRPF31Q8WWY3 499 aaKnown RBP17■□□□□ 0.31
SDC4-201ENST00000372733 MRPL4Q9BYD3 311 aaKnown RBP17■□□□□ 0.31
SDC4-201ENST00000372733 ZNF214Q9UL59 606 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 HEY1Q9Y5J3 304 aa17■□□□□ 0.31
SDC4-201ENST00000372733 PRKCHP24723 683 aa17■□□□□ 0.31
SDC4-201ENST00000372733 YY1P25490 414 aa17■□□□□ 0.31
SDC4-201ENST00000372733 RBL1P28749 1068 aa17■□□□□ 0.31
SDC4-201ENST00000372733 WDR78Q5VTH9 848 aa17■□□□□ 0.31
SDC4-201ENST00000372733 UNC5AQ6ZN44 842 aa17■□□□□ 0.31
SDC4-201ENST00000372733 TTLL6Q8N841 843 aa17■□□□□ 0.31
SDC4-201ENST00000372733 GSTCDQ8NEC7 633 aa17■□□□□ 0.31
SDC4-201ENST00000372733 PIWIL1Q96J94 861 aaKnown RBP17■□□□□ 0.31
SDC4-201ENST00000372733 ZNF668Q96K58 619 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 TEPSINQ96N21 525 aa17■□□□□ 0.31
SDC4-201ENST00000372733 NR1H4Q96RI1 486 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 ADPGKQ9BRR6 497 aa17■□□□□ 0.31
SDC4-201ENST00000372733 SMYD3Q9H7B4 428 aa17■□□□□ 0.31
SDC4-201ENST00000372733 ETAA1Q9NY74 926 aa17■□□□□ 0.31
SDC4-201ENST00000372733 PAK5Q9P286 719 aa17■□□□□ 0.31
SDC4-201ENST00000372733 CPSF3Q9UKF6 684 aaKnown RBP17■□□□□ 0.31
SDC4-201ENST00000372733 HMX2A2RU54 273 aa17■□□□□ 0.31
SDC4-201ENST00000372733 M0QYV0 167 aa17■□□□□ 0.31
SDC4-201ENST00000372733 MED7O43513 233 aa17■□□□□ 0.31
SDC4-201ENST00000372733 SNNO75324 88 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 C6orf222P0C671 652 aaPredicted RBP17■□□□□ 0.31
SDC4-201ENST00000372733 SRGAP2CP0DJJ0 459 aa17■□□□□ 0.31
SDC4-201ENST00000372733 GRM1Q13255 1194 aa17■□□□□ 0.31
SDC4-201ENST00000372733 MTHFD1LQ6UB35 978 aa17■□□□□ 0.31
SDC4-201ENST00000372733 DPH6Q7L8W6 267 aa17■□□□□ 0.31
SDC4-201ENST00000372733 QTRT2Q9H974 415 aaKnown RBP17■□□□□ 0.31
SDC4-201ENST00000372733 GRAP2O75791 330 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 MICAL2O94851 1124 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 APOEP02649 317 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 BPGMP07738 259 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 PDE1BQ01064 536 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 MPP5Q8N3R9 675 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 POU5F2Q8N7G0 328 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 MTMR14Q8NCE2 650 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 MCRS1Q96EZ8 462 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 ZBED3Q96IU2 234 aaPredicted RBP16.99■□□□□ 0.31
SDC4-201ENST00000372733 PCYT2Q99447 389 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 ACO2Q99798 780 aaKnown RBP16.99■□□□□ 0.31
SDC4-201ENST00000372733 MAD1L1Q9Y6D9 718 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 SLC15A5A6NIM6 579 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 LYPLA1O75608 230 aaPredicted RBP16.99■□□□□ 0.31
SDC4-201ENST00000372733 ZBED1O96006 694 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 SLC25A3Q00325 362 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 TMEM132BQ14DG7 1078 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 MMP19Q99542 508 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 NIFKQ9BYG3 293 aaKnown RBP16.99■□□□□ 0.31
SDC4-201ENST00000372733 ZCWPW1Q9H0M4 648 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 XAB2Q9HCS7 855 aaKnown RBP16.99■□□□□ 0.31
SDC4-201ENST00000372733 ASNSD1Q9NWL6 643 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 MKS1Q9NXB0 559 aa16.99■□□□□ 0.31
SDC4-201ENST00000372733 PARP14Q460N5 1801 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 BUD23O43709 281 aaKnown RBP16.98■□□□□ 0.31
SDC4-201ENST00000372733 RNASEH1O60930 286 aaKnown RBP16.98■□□□□ 0.31
SDC4-201ENST00000372733 KRT38O76015 456 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 ENDOD1O94919 500 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 TNNC2P02585 160 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 HMGCRP04035 888 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 PRKCBP05771 671 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 SERPINA6P08185 405 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 CRABP2P29373 138 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 CPOXP36551 454 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 STX3Q13277 289 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 TFDP2Q14188 446 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 KRT81Q14533 505 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 LRRC36Q1X8D7 754 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 LGSNQ5TDP6 509 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 PLD5Q8N7P1 536 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 SLC4A11Q8NBS3 891 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 STKLD1Q8NE28 680 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 FLAD1Q8NFF5 587 aa16.98■□□□□ 0.31
SDC4-201ENST00000372733 PYDC1Q8WXC3 89 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms