RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 LMO2P25791 158 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 CD6P30203 668 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 POLR2BP30876 1174 aaKnown RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 GRIK1P39086 918 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 MAGEA11P43364 429 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 PGFP49763 221 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 TOB1P50616 345 aaPredicted RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 SLC12A3P55017 1021 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 PSMC1P62191 440 aaKnown RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 CXADRP78310 365 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 IL9RQ01113 521 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 LY6DQ14210 128 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 ME3Q16798 604 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 TTC38Q5R3I4 469 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 DCAF12L1Q5VU92 463 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 KIAA1324Q6UXG2 1013 aaKnown RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 SPATA2LQ8IUW3 424 aaPredicted RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 CD302Q8IX05 232 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 SPACA3Q8IXA5 215 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 KIAA1958Q8N8K9 716 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 C1orf127Q8N9H9 656 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 FSIP1Q8NA03 581 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 SNIP1Q8TAD8 396 aaKnown RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 WASF1Q92558 559 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 FOXJ1Q92949 421 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 SPATA17Q96L03 361 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 PLIN2Q99541 437 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 TTLL2Q9BWV7 592 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 USP36Q9P275 1121 aaKnown RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 DEC1Q9P2X7 70 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 EIF2B4Q9UI10 523 aaKnown RBP9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 C2CD2Q9Y426 696 aa9.06□□□□□ -0.96
HMGB1P39-201ENST00000366304 METTL12A8MUP2 240 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 MEI4A8MW99 385 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 E9PAM4 449 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 H0Y8X5 98 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 SLC9A3R1O14745 358 aaPredicted RBP9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 CAPN9O14815 690 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 COCHO43405 550 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 GREM1O60565 184 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 WISP1O95388 367 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 BDNFP23560 247 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 SMTNP53814 917 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 GAD2Q05329 585 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 CCDC173Q0VFZ6 552 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 TAF10Q12962 218 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 TARDBPQ13148 414 aaKnown RBP eCLIP9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 DNAJC3Q13217 504 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 KYAT1Q16773 422 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 SOWAHAQ2M3V2 549 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 FUT11Q495W5 492 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 SV2CQ496J9 727 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 LIAT1Q6ZQX7 453 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 USP49Q70CQ1 688 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 TMPRSS12Q86WS5 348 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 ERICH1Q86X53 443 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 CHPFQ8IZ52 775 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 SYT2Q8N9I0 419 aaPredicted RBP9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 KBTBD7Q8WVZ9 684 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 GTF3C6Q969F1 213 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 MYLPFQ96A32 169 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 NXPE2Q96DL1 559 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 ASB7Q9H672 318 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 ITM2CQ9NQX7 267 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 TRPM5Q9NZQ8 1165 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 SIX4Q9UIU6 781 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 AGAP1Q9UPQ3 857 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 FCF1Q9Y324 198 aaKnown RBP9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 NFE2L3Q9Y4A8 694 aa9.05□□□□□ -0.96
HMGB1P39-201ENST00000366304 MYO9AB2RTY4 2548 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 E2F8A0AVK6 867 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 B8ZZF3 427 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 ABL1P00519 1130 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 ITGB3P05106 788 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 CISD3P0C7P0 127 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 PFKLP17858 780 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 PLCG1P19174 1290 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 ADSSP30520 456 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 TPMTP51580 245 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 RTP5Q14D33 572 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 ANO4Q32M45 955 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 MSS51Q4VC12 460 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 LRRC69Q6ZNQ3 347 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 DENND5BQ6ZUT9 1274 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 TRMT11Q7Z4G4 463 aaKnown RBP9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 LIMS2Q7Z4I7 341 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 ADGRF2Q8IZF7 708 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 CADM4Q8NFZ8 388 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 FUBP3Q96I24 572 aaKnown RBP eCLIP9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 USB1Q9BQ65 265 aaKnown RBP9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 REEP2Q9BRK0 252 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 TIPINQ9BVW5 301 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 CCSER2Q9H7U1 834 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 CPNE5Q9HCH3 593 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 SPHK2Q9NRA0 654 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 DNAJC17Q9NVM6 304 aaKnown RBP9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 PCDHB6Q9Y5E3 794 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 STYXL1Q9Y6J8 313 aa9.04□□□□□ -0.96
HMGB1P39-201ENST00000366304 AK5Q9Y6K8 562 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms