RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 RABGGTBP53611 331 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 WDR5P61964 334 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 TSPY1Q01534 308 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 YWHAHQ04917 246 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 PIGHQ14442 188 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 QPCTQ16769 361 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 PPP1R15BQ5SWA1 713 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 OR6B2Q6IFH4 312 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 TTC27Q6P3X3 843 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 TRMT10CQ7L0Y3 403 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 LRRC43Q8N309 656 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 CCDC197Q8NCU1 140 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 TOP1MTQ969P6 601 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 MCRS1Q96EZ8 462 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 B3GALT6Q96L58 329 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 DUSP16Q9BY84 665 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 B3GNT5Q9BYG0 378 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 GPR62Q9BZJ7 368 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 LRRC19Q9H756 370 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 TMLHEQ9NVH6 421 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 NLRC5Q86WI3 1866 aa13.75□□□□□ -0.21
SQSTM1-201ENST00000360718 EFCAB14O75071 495 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 GALTP07902 379 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 MAN1A1P33908 653 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 CACNA2D1P54289 1103 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 PLCB3Q01970 1234 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 OGDHQ02218 1023 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 ZNF252P-AS1Q0IIN9 211 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 MAPRE1Q15691 268 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 KCTD19Q17RG1 926 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 FAM102AQ5T9C2 384 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 OTOP2Q7RTS6 562 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 LRRTM3Q86VH5 581 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 ZDHHC17Q8IUH5 632 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 CCDC50Q8IVM0 306 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 MDM1Q8TC05 714 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 PCED1BQ96HM7 432 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 PKMYT1Q99640 499 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM175Q9BSA9 504 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC4A5Q9BY07 1137 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 RHOBTB2Q9BYZ6 727 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 SEMA4AQ9H3S1 761 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 METTL5Q9NRN9 209 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 INTS9Q9NV88 658 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 GEMIN8Q9NWZ8 242 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 RASGRF2O14827 1237 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 RIPK2O43353 540 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 FAM200BP0CF97 657 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 NPR3P17342 541 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 SSR1P43307 286 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 PPP1R7Q15435 360 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 SYDE1Q6ZW31 735 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 TMEM110Q86TL2 294 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 BADQ92934 168 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 SLCO2A1Q92959 643 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 HSFY1Q96LI6 401 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 NSRP1Q9H0G5 558 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 CWH43Q9H720 699 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 RC3H2Q9HBD1 1191 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 KLC4Q9NSK0 619 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 WHRNQ9P202 907 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 ADAM28Q9UKQ2 775 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 USTQ9Y2C2 406 aa13.74□□□□□ -0.21
SQSTM1-201ENST00000360718 FSCN2O14926 492 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 XPO1O14980 1071 aaKnown RBP13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 AMHP03971 560 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 RARAP10276 462 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 DESP17661 470 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 ATP5DP30049 168 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 ANKRD20A8PQ5CZ79 823 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 INTS6LQ5JSJ4 861 aaKnown RBP13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 ZDHHC14Q8IZN3 488 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 JOSD2Q8TAC2 188 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 CCDC134Q9H6E4 229 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 SAMD15Q9P1V8 674 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 PRKAG2Q9UGJ0 569 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 SYN3O14994 580 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 RASSF9O75901 435 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 OR4Q2P0C623 313 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 ITIH2P19823 946 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 RFC1P35251 1148 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 PPARDQ03181 441 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 ELAVL2Q12926 359 aaKnown RBP13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 ITIH4Q14624 930 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 FAM183BPQ6ZVS7 135 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 PLCD3Q8N3E9 789 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 FNIP1Q8TF40 1166 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 GRK7Q8WTQ7 553 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 ZNF689Q96CS4 500 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 IL23AQ9NPF7 189 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 KRT82Q9NSB4 513 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 HOMER3Q9NSC5 361 aa13.73□□□□□ -0.21
SQSTM1-201ENST00000360718 SMIM23A6NLE4 172 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 CHUKO15111 745 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 SF3B1O75533 1304 aaKnown RBP eCLIP13.72□□□□□ -0.212e-6■■■■■ 62.6
SQSTM1-201ENST00000360718 PSMA2P25787 234 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 RANBP2P49792 3224 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 SLC6A3Q01959 620 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 CAV1Q03135 178 aa13.72□□□□□ -0.21
SQSTM1-201ENST00000360718 TRNP1Q6NT89 227 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms