RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CFAP69A5D8W1 941 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 PIRO00625 290 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 MGRN1O60291 552 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 ZWINTO95229 277 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 MAP3K6O95382 1288 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 F2P00734 622 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 FGFR1P11362 822 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 CYP2C9P11712 490 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 CCDC130P13994 396 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 LMO2P25791 158 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 MNAT1P51948 309 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 LVRNQ6Q4G3 990 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 CRYBG2Q8N1P7 616 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 ANKRD52Q8NB46 1076 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 ECT2Q9H8V3 914 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 TCRBV9S1A1TA0A576 114 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 KBTBD13C9JR72 458 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 PTPN9P43378 593 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 PPP6R3Q5H9R7 873 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 FBXO47Q5MNV8 452 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 LRRC8CQ8TDW0 803 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 CENPIQ92674 756 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 PTPN18Q99952 460 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 SMIM28A0A1B0GU29 152 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 CFAP73A6NFT4 308 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 ZNF487B1APH4 448 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 SPTLC1O15269 473 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 EDF1O60869 148 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 ZBED1O96006 694 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 DESP17661 470 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 ADORA2BP29275 332 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 L1CAMP32004 1257 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 GBP2P32456 591 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 GNL1P36915 607 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 BST2Q10589 180 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 FAM110CQ1W6H9 321 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 SLC26A9Q7LBE3 791 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 PNMA8AQ86V59 439 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 BANPQ8N9N5 519 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 NRDE2Q9H7Z3 1164 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 KLK14Q9P0G3 267 aa21.66■■□□□ 1.06
CCDC88B-203ENST00000359902 IQCA1LA6NCM1 817 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 KPNA7A9QM74 516 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 CYP2F1P24903 491 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 RPL34P49207 117 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 ATXN1P54253 815 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 TBC1D1Q86TI0 1168 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 ANKLE1Q8NAG6 615 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 LRRN4Q8WUT4 740 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 TMEM40Q8WWA1 233 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 DNAJB3Q8WWF6 145 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 MAGEB5Q9BZ81 275 aa21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 GNEQ9Y223 722 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-203ENST00000359902 SLC15A5A6NIM6 579 aa21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 CD4P01730 458 aa21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 BCAT1P54687 386 aa21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 DPYSL2Q16555 572 aa21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 KBTBD12Q3ZCT8 623 aa21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 ZNF618Q5T7W0 954 aa21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 ZNF75CPQ92670 426 aaPredicted RBP21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 PARK7Q99497 189 aaKnown RBP21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 RNF39Q9H2S5 420 aa21.64■■□□□ 1.06
CCDC88B-203ENST00000359902 GOLGA8RI6L899 631 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 LCP1P13796 627 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 AXLP30530 894 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 YWHAGP61981 247 aaKnown RBP eCLIP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 YWHAZP63104 245 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 ZNF200P98182 395 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 SNCBQ16143 134 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 FAXCQ5TGI0 409 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 ARCQ7LC44 396 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 ZNF276Q8N554 614 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 TCP10LQ8TDR4 215 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC44A1Q8WWI5 657 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 ALKBH8Q96BT7 664 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 THOC1Q96FV9 657 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 KLF6Q99612 283 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 FRMD8Q9BZ67 464 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 ETNK2Q9NVF9 386 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 GDAP2Q9NXN4 497 aa21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 PIN4Q9Y237 131 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-203ENST00000359902 SPAG6O75602 509 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 ADRA1DP25100 572 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 MAGEA6P43360 314 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 ADAM17P78536 824 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 CCDC15Q0P6D6 951 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 FAM228AQ86W67 206 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 DHX35Q9H5Z1 703 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 ETNK1Q9HBU6 452 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 PNPLA8Q9NP80 782 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 MTMR10Q9NXD2 777 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC5A4Q9NY91 659 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 SCNN1AP37088 669 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC10A2Q12908 348 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 MFSD10Q14728 455 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 SNX17Q15036 470 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 XKR4Q5GH76 650 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 CAND1Q86VP6 1230 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 CCDC110Q8TBZ0 833 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 KLC2Q9H0B6 622 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms