RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PIN4Q9Y237 131 aaKnown RBP20.14■□□□□ 0.82
COL9A3-201ENST00000343916 ZBED1O96006 694 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 SLC18A1P54219 525 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 KCNJ2P63252 427 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 E2F5Q15329 346 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 ALKAL1Q6UXT8 129 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 CCDC110Q8TBZ0 833 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 KBTBD7Q8WVZ9 684 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 PTPN18Q99952 460 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 FAM124BQ9H5Z6 455 aaPredicted RBP20.14■□□□□ 0.81
COL9A3-201ENST00000343916 RXFP1Q9HBX9 757 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 DERAQ9Y315 318 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 TEX264Q9Y6I9 313 aa20.14■□□□□ 0.81
COL9A3-201ENST00000343916 DARSP14868 501 aaKnown RBP20.13■□□□□ 0.81
COL9A3-201ENST00000343916 ZNF200P98182 395 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-201ENST00000343916 BNIP1Q12981 228 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 FBXO47Q5MNV8 452 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 SLC9A4Q6AI14 798 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 IQSEC1Q6DN90 963 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 PLEKHH3Q7Z736 793 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 KIF2BQ8N4N8 673 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 LRRC52Q8N7C0 313 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 TCP10LQ8TDR4 215 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 LRRC8CQ8TDW0 803 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 CNTN3Q9P232 1028 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 FETUBQ9UGM5 382 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 DOCK3Q8IZD9 2030 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 RRN3P2A6NIE6 340 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 APRTP07741 180 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 PNMA8AQ86V59 439 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-201ENST00000343916 GIMAP7Q8NHV1 300 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 CFAP36Q96G28 342 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 DHX35Q9H5Z1 703 aaKnown RBP20.13■□□□□ 0.81
COL9A3-201ENST00000343916 SLC17A7Q9P2U7 560 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 TRIM33Q9UPN9 1127 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 SLC45A1Q9Y2W3 748 aa20.13■□□□□ 0.81
COL9A3-201ENST00000343916 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 SMAPO00193 183 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 ATP2A2P16615 1042 aaKnown RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 CYP2F1P24903 491 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 GBE1Q04446 702 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 ANKRD23Q86SG2 305 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 PRPF39Q86UA1 669 aaKnown RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 TEKT4Q8WW24 435 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 GRAMD1AQ96CP6 724 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 CYTH2Q99418 400 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 PAK5Q9P286 719 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 MCM8Q9UJA3 840 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 NR2E3Q9Y5X4 410 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 NRCAMQ92823 1304 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 SMIM28A0A1B0GU29 152 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 CHADO15335 359 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 SETSIPP0DME0 302 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 TGM2P21980 687 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 GBP2P32456 591 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 SOX4Q06945 474 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 SLC10A2Q12908 348 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 RNF43Q68DV7 783 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 NDRG1Q92597 394 aaKnown RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 NRDE2Q9H7Z3 1164 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 ALG13Q9NP73 1137 aaKnown RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 SLC5A4Q9NY91 659 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-201ENST00000343916 STARD13Q9Y3M8 1113 aa20.12■□□□□ 0.81
COL9A3-201ENST00000343916 TRIP12Q14669 1992 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 KPNA7A9QM74 516 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 MDM4O15151 490 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 MGRN1O60291 552 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 EDF1O60869 148 aaKnown RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 FAM155BO75949 473 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 F2P00734 622 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 GNL1P36915 607 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 YWHAZP63104 245 aaKnown RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 PTK7Q13308 1070 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 UNC93AQ86WB7 457 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 GBP7Q8N8V2 638 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 SLC2A14Q8TDB8 520 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 TBCBQ99426 244 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 TRIM56Q9BRZ2 755 aaKnown RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 ZNF670Q9BS34 389 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 ETNK1Q9HBU6 452 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 UBQLN1Q9UMX0 589 aaKnown RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 A6NJR5 290 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 TREHO43280 583 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 L1CAMP32004 1257 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 BST2Q10589 180 aaKnown RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 ARHGAP17Q68EM7 881 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 APBB1IPQ7Z5R6 666 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 CCDC185Q8N715 623 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 ZNF75CPQ92670 426 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-201ENST00000343916 SERAC1Q96JX3 654 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 PLCD4Q9BRC7 762 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 ETNK2Q9NVF9 386 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 MFHAS1Q9Y4C4 1052 aa20.11■□□□□ 0.81
COL9A3-201ENST00000343916 IGF2BP3O00425 579 aaKnown RBP eCLIP20.1■□□□□ 0.81
COL9A3-201ENST00000343916 PIRO00625 290 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 ZWINTO95229 277 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 FAAP100Q0VG06 881 aa20.1■□□□□ 0.81
COL9A3-201ENST00000343916 SEPT7Q16181 437 aaKnown RBP20.1■□□□□ 0.81
COL9A3-201ENST00000343916 WLSQ5T9L3 541 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms