RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FRMD8Q9BZ67 464 aaPredicted RBP10.52□□□□□ -0.72
USP54-201ENST00000339859 TBC1D13Q9NVG8 400 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 CDY1Q9Y6F8 540 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 CLUHO75153 1309 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 ZNF263O14978 683 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 STX7O15400 261 aaKnown RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 FGF10O15520 208 aaPredicted RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 PCDH8O95206 1070 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 ATP1A1P05023 1023 aaKnown RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 GABRR2P28476 465 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 GJA5P36382 358 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 MAPK8IP2Q13387 824 aaPredicted RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 ALS2CLQ60I27 953 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 EMBQ6PCB8 327 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 OOSP2Q86WS3 158 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 GPATCH11Q8N954 259 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 ZSWIM1Q9BR11 485 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 SQORQ9Y6N5 450 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 BCORQ6W2J9 1755 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 ESRRBO95718 433 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 APRTP07741 180 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 STIP1P31948 543 aaKnown RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 ATXN3P54252 364 aaPredicted RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 PDCLQ13371 301 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 PTK6Q13882 451 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 GPR158Q5T848 1215 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 CST9Q5W186 159 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 UGT3A1Q6NUS8 523 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 FAM35AQ86V20 835 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 FAM228AQ86W67 206 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 DUSP16Q9BY84 665 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 MED4Q9NPJ6 270 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 RRP9O43818 475 aaKnown RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 KLRC4O43908 158 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 ERBB2P04626 1255 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 PPP3CAQ08209 521 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 PTRHD1Q6GMV3 140 aaKnown RBP10.52□□□□□ -0.73
USP54-201ENST00000339859 VSIG1Q86XK7 387 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 KLHL14Q9P2G3 628 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 TBC1D14Q9P2M4 693 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 SNX12Q9UMY4 172 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 PMS2P54278 862 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 TAPT1Q6NXT6 567 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 PTPRN2Q92932 1015 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 MS4A4AQ96JQ5 239 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 NFKBIZQ9BYH8 718 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 AIPL1Q9NZN9 384 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 TBK1Q9UHD2 729 aa10.52□□□□□ -0.73
USP54-201ENST00000339859 SIPA1L3O60292 1781 aaPredicted RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 ZNF865P0CJ78 1059 aaPredicted RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 HSPA8P11142 646 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 RRM1P23921 792 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 CYP2F1P24903 491 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 RGS4P49798 205 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 SP2Q02086 613 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 MTF1Q14872 753 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 RBBP7Q16576 425 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 INTS6LQ5JSJ4 861 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 TBC1D1Q86TI0 1168 aaPredicted RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 SCUBE3Q8IX30 993 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 TGS1Q96RS0 853 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 MRPL45Q9BRJ2 306 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 SPATA16Q9BXB7 569 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 DDX47Q9H0S4 455 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 GOLPH3Q9H4A6 298 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 BRD9Q9H8M2 597 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 NFU1Q9UMS0 254 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 ZMYND10O75800 440 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 SYF2O95926 243 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 ATXN8OSP0DMR3 200 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 TIGD5Q53EQ6 642 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 TPGS1Q6ZTW0 290 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 PPM1NQ8N819 430 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 VPS11Q9H270 941 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 E5RJQ4 531 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 SPTLC1O15269 473 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 CRTAMO95727 393 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 PYGLP06737 847 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 ITIH2P19823 946 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 MMEL1Q495T6 779 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 TMCO4Q5TGY1 634 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 C16orf59Q7L2K0 433 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 FOXP3Q9BZS1 431 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 CNOT10Q9H9A5 744 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 GPATCH2LQ9NWQ4 482 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 ZFATQ9P243 1243 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 SPATA31D3P0C874 917 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 CLCNKBP51801 687 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 RARS2Q5T160 578 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 SPATA31D4Q6ZUB0 917 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 CASP10Q92851 521 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 TKTL2Q9H0I9 626 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 KCTD10Q9H3F6 313 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP54-201ENST00000339859 ZMYM5Q9UJ78 669 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 MRPS17Q9Y2R5 130 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 A0A1B0GUA9 196 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 NVLO15381 856 aaKnown RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 POLBP06746 335 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms