RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 NAPBQ9H115 298 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 VPS11Q9H270 941 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 APEX2Q9UBZ4 518 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ZBTB21Q9ULJ3 1066 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MLH3Q9UHC1 1453 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CC2D2AQ9P2K1 1620 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 THAP12O43422 761 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 APOL3O95236 402 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SMIM18P0DKX4 95 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FCGR1AP12314 374 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SYN1P17600 705 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RRM1P23921 792 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 EXOSC10Q01780 885 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PTK2Q05397 1052 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 BST2Q10589 180 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FLOT2Q14254 428 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ZFP69Q49AA0 526 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PRR16Q569H4 304 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 LGSNQ5TDP6 509 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SLFN13Q68D06 897 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PGM2L1Q6PCE3 622 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PLEKHG7Q6ZR37 379 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ULK2Q8IYT8 1036 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 LARGE2Q8N3Y3 721 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CCNYL1Q8N7R7 359 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TDRD5Q8NAT2 981 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SLC30A5Q8TAD4 765 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ARHGEF26Q96DR7 871 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ACAD9Q9H845 621 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 STRN4Q9NRL3 753 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PAQR5Q9NXK6 330 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 WHRNQ9P202 907 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 KLF15Q9UIH9 416 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TLK1Q9UKI8 766 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MKLN1Q9UL63 735 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 WASF2Q9Y6W5 498 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ZMYM2Q9UBW7 1377 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MAGI1Q96QZ7 1491 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PNMA6FA0A0J9YX94 578 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 KLF18A0A0U1RQI7 1052 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TYW5A2RUC4 315 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 WRBO00258 174 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RHOBTB3O94955 611 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 S100A9P06702 114 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CD48P09326 243 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 BMP1P13497 986 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RAG1P15918 1043 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 GRK2P25098 689 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ERP29P30040 261 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RFC4P35249 363 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 NLRP11P59045 1033 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 GBE1Q04446 702 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 BTKQ06187 659 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FAPQ12884 760 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SLC29A2Q14542 456 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 LRRC14Q15048 493 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PFKFB3Q16875 520 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TBRG1Q3YBR2 411 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ARMC4Q5T2S8 1044 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MACC1Q6ZN28 852 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 NT5DC4Q86YG4 428 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 STX19Q8N4C7 294 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ART4Q93070 314 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TUBGCP3Q96CW5 907 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RIPOR3Q96MK2 946 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 MUC3BQ9H195 1237 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FAM207AQ9NSI2 230 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 RIC8BQ9NVN3 520 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 GABBR1Q9UBS5 961 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PSMD9O00233 223 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 WASLO00401 505 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 POLR2DO15514 142 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SORBS3O60504 671 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 TSHRP16473 764 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ATF4P18848 351 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PTX3P26022 381 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 HLA-FP30511 346 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SLC26A2P50443 739 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 FLI1Q01543 452 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PRKCEQ02156 737 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 DCAF6Q58WW2 860 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 DBX2Q6ZNG2 339 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 SPATA2LQ8IUW3 424 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CCDC116Q8IYX3 515 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CHPFQ8IZ52 775 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 KRT35Q92764 455 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CELF1Q92879 486 aaKnown RBP4.29□□□□□ -1.72
NEDD4-201ENST00000338963 ISOC1Q96CN7 298 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CNPY3Q9BT09 278 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 KIFC1Q9BW19 673 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 POLD4Q9HCU8 107 aa4.29□□□□□ -1.72
NEDD4-201ENST00000338963 CUL7Q14999 1698 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF335Q9H4Z2 1342 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ENPP3O14638 875 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ST8SIA5O15466 376 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 GAS7O60861 476 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FGF18O76093 207 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SNAP29O95721 258 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 PGK2P07205 417 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms