RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 HECTD3Q5T447 861 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 POLNQ7Z5Q5 900 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CDK5RAP1Q96SZ6 601 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 VPS45Q9NRW7 570 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PI4KBQ9UBF8 816 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 NEDD4P46934 1319 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 KCNQ3O43525 872 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PGAM1P18669 254 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ALDH1A3P47895 512 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PHKG1Q16816 387 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 BOLA3Q53S33 107 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 REXO1L1PQ8IX06 675 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CMTR1Q8N1G2 835 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 OR6P1Q8NGX9 317 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PROX1Q92786 737 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 LXNQ9BS40 222 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 DHX35Q9H5Z1 703 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ANKZF1Q9H8Y5 726 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RBAKQ9NYW8 714 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 BBIP1A8MTZ0 92 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 VPS26AO75436 327 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 STARP49675 285 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CLCN2P51788 898 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 FRG1Q14331 258 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SMCO1Q147U7 214 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 DGKKQ5KSL6 1271 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 XRRA1Q6P2D8 792 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RFX8Q6ZV50 586 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CLVS1Q8IUQ0 354 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RNF25Q96BH1 459 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 FICDQ9BVA6 458 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PRKD2Q9BZL6 878 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 NUAK2Q9H093 628 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 POLR3FQ9H1D9 316 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CCNL1Q9UK58 526 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PKP3Q9Y446 797 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 TRDMT1O14717 391 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ASS1P00966 412 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 NR2C2P49116 596 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 NFIL3Q16649 462 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 KIZQ2M2Z5 673 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ZNF568Q3ZCX4 644 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PDCD4Q53EL6 469 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SHC4Q6S5L8 630 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SCARA5Q6ZMJ2 495 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 FAM220AQ7Z4H9 259 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SLC44A2Q8IWA5 706 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ANKRD13AQ8IZ07 590 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CENPIQ92674 756 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 FAM111AQ96PZ2 611 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 KLHL28Q9NXS3 571 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PTTG2Q9NZH5 202 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 LOC100653049A0A140TA62 436 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 BTNL10A8MVZ5 291 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CHST10O43529 356 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 UGT2B11O75310 529 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 GPD1P21695 349 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SEC24CP53992 1094 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 TGM3Q08188 693 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CDK20Q8IZL9 346 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 GJD3Q8N144 294 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 DHRSXQ8N5I4 330 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 EEF1AKMT1Q8WVE0 214 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PTCD3Q96EY7 689 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ZNF512BQ96KM6 892 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 LRRC40Q9H9A6 602 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ZNF302Q9NR11 478 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PRDM4Q9UKN5 801 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 DUSP12Q9UNI6 340 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 EIF4E1BA6NMX2 242 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ZNF185O15231 689 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 TPD52L2O43399 206 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 UBOX5O94941 541 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 NR3C2P08235 984 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PTDSS1P48651 473 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RABL6Q3YEC7 729 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RASSF6Q6ZTQ3 369 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SH3BP5LQ7L8J4 393 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 NEDD1Q8NHV4 660 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 TUBGCP5Q96RT8 1024 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SRPK1Q96SB4 655 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PHF20Q9BVI0 1012 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SLC38A7Q9NVC3 462 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PNMA3Q9UL41 463 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RNF112Q9ULX5 631 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CLOCKO15516 846 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RPLP2P05387 115 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CYP2D6P10635 497 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 CPA3P15088 417 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 NR4A1P22736 598 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 RPL3P39023 403 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 IL6STP40189 918 aaPredicted RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PRKCQQ04759 706 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 TXNRD1Q16881 649 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 ZFP69Q49AA0 526 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 SPANXN3Q5MJ09 141 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 STOX1Q6ZVD7 989 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 EIF3MQ7L2H7 374 aaKnown RBP5.68□□□□□ -1.5
PTPRB-202ENST00000334414 AP5M1Q9H0R1 490 aa5.68□□□□□ -1.5
PTPRB-202ENST00000334414 PLK2Q9NYY3 685 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms