RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 E2F8A0AVK6 867 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 GREM1O60565 184 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 ZBED1O96006 694 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 MAGEA9P43362 315 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 RGS7P49802 495 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 GAS6Q14393 721 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 GAB4Q2WGN9 574 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 KLHDC10Q6PID8 442 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 CPA6Q8N4T0 437 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 ZNF606Q8WXB4 792 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 PHOX2BQ99453 314 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 NACA2Q9H009 215 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 VPS16Q9H269 839 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 CHRDQ9H2X0 955 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 LRRC4Q9HBW1 653 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 RBM12Q9NTZ6 932 aaKnown RBP16.63■□□□□ 0.25
CLN3-201ENST00000333496 DNAJC12Q9UKB3 198 aa16.63■□□□□ 0.25
CLN3-201ENST00000333496 PES1O00541 588 aaKnown RBP16.62■□□□□ 0.25
CLN3-201ENST00000333496 TRDMT1O14717 391 aaKnown RBP16.62■□□□□ 0.25
CLN3-201ENST00000333496 LETM1O95202 739 aaPredicted RBP16.62■□□□□ 0.25
CLN3-201ENST00000333496 IRF1P10914 325 aa16.62■□□□□ 0.25
CLN3-201ENST00000333496 GPD2P43304 727 aa16.62■□□□□ 0.25
CLN3-201ENST00000333496 MYL5Q02045 173 aa16.62■□□□□ 0.25
CLN3-201ENST00000333496 CCINQ13939 588 aa16.62■□□□□ 0.25
CLN3-201ENST00000333496 TMEM196Q5HYL7 178 aa16.62■□□□□ 0.25
CLN3-201ENST00000333496 FAM122AQ96E09 287 aa16.62■□□□□ 0.25
CLN3-201ENST00000333496 FAM86C1Q9NVL1 165 aa16.62■□□□□ 0.25
CLN3-201ENST00000333496 PIK3R2O00459 728 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 NFATC1O95644 943 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 CYP17A1P05093 508 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 PNMA6AP0CW24 399 aaPredicted RBP16.61■□□□□ 0.25
CLN3-201ENST00000333496 RALAP11233 206 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 LCP1P13796 627 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 GNA15P30679 374 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 YWHAGP61981 247 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLN3-201ENST00000333496 MTAPQ13126 283 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 C10orf120Q5SQS8 335 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 FSTL4Q6MZW2 842 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 BBS7Q8IWZ6 715 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 SCML4Q8N228 414 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 TBC1D14Q9P2M4 693 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 DNMT3LQ9UJW3 386 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 SH3BP1Q9Y3L3 701 aa16.61■□□□□ 0.25
CLN3-201ENST00000333496 YJEFN3A6XGL0 299 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 E7ENQ6 273 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 FOXN3O00409 490 aaPredicted RBP16.6■□□□□ 0.25
CLN3-201ENST00000333496 SLC9A3R1O14745 358 aaPredicted RBP16.6■□□□□ 0.25
CLN3-201ENST00000333496 ZNF18P17022 549 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 CLCN1P35523 988 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 USP8P40818 1118 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 RPL34P49207 117 aaKnown RBP16.6■□□□□ 0.25
CLN3-201ENST00000333496 GALK1P51570 392 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 DAOAP59103 153 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 DHCR24Q15392 516 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 ANO6Q4KMQ2 910 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 KLHDC7AQ5VTJ3 777 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 DENND1BQ6P3S1 775 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 RHBDF2Q6PJF5 856 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 Q6ZS52 159 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 HTR3DQ70Z44 454 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 FUCA2Q9BTY2 467 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 NAA15Q9BXJ9 866 aaKnown RBP16.6■□□□□ 0.25
CLN3-201ENST00000333496 GRPEL1Q9HAV7 217 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 CNGB3Q9NQW8 809 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 SPATA6Q9NWH7 488 aaPredicted RBP16.6■□□□□ 0.25
CLN3-201ENST00000333496 CYTH4Q9UIA0 394 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 FHOD1Q9Y613 1164 aa16.6■□□□□ 0.25
CLN3-201ENST00000333496 THAP12O43422 761 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 OPRD1P41143 372 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 AMPD2Q01433 879 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 NR1H3Q13133 447 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 DGKKQ5KSL6 1271 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 APTXQ7Z2E3 356 aaKnown RBP16.59■□□□□ 0.25
CLN3-201ENST00000333496 SIX6OS1Q8N1H7 587 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 ARHGAP18Q8N392 663 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 AOPEPQ8N6M6 819 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 CLEC4CQ8WTT0 213 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 EZH1Q92800 747 aaPredicted RBP16.59■□□□□ 0.25
CLN3-201ENST00000333496 ATOH1Q92858 354 aaPredicted RBP16.59■□□□□ 0.25
CLN3-201ENST00000333496 HSFY1Q96LI6 401 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 IRF2BPLQ9H1B7 796 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 LIMA1Q9UHB6 759 aaKnown RBP16.59■□□□□ 0.25
CLN3-201ENST00000333496 MYO18AQ92614 2054 aaKnown RBP16.59■□□□□ 0.25
CLN3-201ENST00000333496 MED7O43513 233 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 STC2O76061 302 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 EGFP01133 1207 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 KLK7P49862 253 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 COPB1P53618 953 aaKnown RBP16.59■□□□□ 0.25
CLN3-201ENST00000333496 EFEMP1Q12805 493 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 LRRC32Q14392 662 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 MEA1Q16626 185 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 ZSCAN23Q3MJ62 389 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 BSPRYQ5W0U4 402 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 MAMSTRQ6ZN01 415 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 MIB1Q86YT6 1006 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 FAM71AQ8IYT1 594 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 OTUB2Q96DC9 234 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 P2RY13Q9BPV8 354 aa16.59■□□□□ 0.25
CLN3-201ENST00000333496 LSM14BQ9BX40 385 aaKnown RBP16.59■□□□□ 0.25
CLN3-201ENST00000333496 LRRC10BA6NIK2 292 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms