RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 RAG1P15918 1043 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 INHBCP55103 352 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 GUCA2AQ02747 115 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 STX3Q13277 289 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 SPDYAQ5MJ70 313 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 ATG16L1Q676U5 607 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 IYDQ6PHW0 289 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 ARHGAP18Q8N392 663 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.18□□□□□ -1.1
VMA21-201ENST00000330374 CERKQ8TCT0 537 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 MSTO1Q9BUK6 570 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 S100A14Q9HCY8 104 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 DNAAF2Q9NVR5 837 aaKnown RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 KCNK4Q9NYG8 393 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 DNAJC16Q9Y2G8 782 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 ZNF536O15090 1300 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 CAPN14A8MX76 684 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 WDR64B1ANS9 1081 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 PMM2O15305 246 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 ITM2AO43736 263 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 KRT37O76014 449 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 C4BPAP04003 597 aaKnown RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 KRT3P12035 628 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 DNAL1Q4LDG9 190 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 RAB6CQ53S08 254 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 TRIM72Q6ZMU5 477 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 RNF111Q6ZNA4 994 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 DEFB107AQ8IZN7 70 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 LARGE2Q8N3Y3 721 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.18□□□□□ -1.1
VMA21-201ENST00000330374 CEP70Q8NHQ1 597 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 GTF3C2Q8WUA4 911 aaPredicted RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 RAB6CQ9H0N0 254 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 SSU72Q9NP77 194 aaKnown RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 SOX13Q9UN79 622 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 COL5A3P25940 1745 aaPredicted RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 A0A088AWK7 358 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 TGDSO95455 350 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 VCLP18206 1134 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 RXRBP28702 533 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 RAP1GAPP47736 663 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 PSMC1P62191 440 aaKnown RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 MRPS5P82675 430 aaKnown RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 TMED1Q13445 227 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 MAP7Q14244 749 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 PDK3Q15120 406 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 DLGAP5Q15398 846 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 TTC39BQ5VTQ0 682 aaPredicted RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 DPY19L2Q6NUT2 758 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 SCYL2Q6P3W7 929 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 CASC4Q6P4E1 433 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 TRMT10BQ6PF06 316 aaKnown RBP8.18□□□□□ -1.1
VMA21-201ENST00000330374 TAS1R3Q7RTX0 852 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 SLC26A11Q86WA9 606 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 CHSY1Q86X52 802 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 KIAA0319LQ8IZA0 1049 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 UNC5BQ8IZJ1 945 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 RNF148Q8N7C7 305 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 TMEM35BQ8NCS4 154 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 RMDN3Q96TC7 470 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 GRIP2Q9C0E4 1043 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 MAN1C1Q9NR34 630 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 GPATCH2LQ9NWQ4 482 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 PCDHGB4Q9UN71 923 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 PLA2G4CQ9UP65 541 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 PCDHGB5Q9Y5G0 923 aa8.18□□□□□ -1.1
VMA21-201ENST00000330374 F8W8V4 182 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 KCNN4O15554 427 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 EXTL3O43909 919 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 LRCH4O75427 683 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CALB1P05937 261 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 SNRPAP09012 282 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 DHRS4L1P0CG22 281 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CRABP2P29373 138 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 MYL6P60660 151 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 RPS6P62753 249 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 RBM44Q6ZP01 1051 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 NME8Q8N427 588 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 TFAP2BQ92481 460 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 OLFM3Q96PB7 478 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 DHRS4Q9BTZ2 278 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 KLHL4Q9C0H6 718 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 PPCSQ9HAB8 311 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 FBXO40Q9UH90 709 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 PLLPQ9Y342 182 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 HBS1LQ9Y450 684 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 MYO18AQ92614 2054 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 BUD23O43709 281 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 KDELR1P24390 212 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 ROR1Q01973 937 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 MSLNQ13421 630 aaPredicted RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 SH3PXD2AQ5TCZ1 1133 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 ARHGEF16Q5VV41 709 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 DRICH1Q6PGQ1 229 aaPredicted RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 CDR2LQ86X02 465 aaPredicted RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 C4orf19Q8IY42 314 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 MS4A4AQ96JQ5 239 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CNBD2Q96M20 576 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 FBXL18Q96ME1 805 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms