RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 IRF2BP2Q7Z5L9 587 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 CCDC89Q8N998 374 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 FBXL13Q8NEE6 735 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ATG4AQ8WYN0 398 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 CCDC28BQ9BUN5 200 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 TMEM134Q9H6X4 195 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 PRKAG3Q9UGI9 489 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 CIDEBQ9UHD4 219 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ZNF148Q9UQR1 794 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 LZTS1Q9Y250 596 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 EDF1O60869 148 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 KITP10721 976 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 CHKAP35790 457 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 MFAP3P55082 362 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 PRMT2P55345 433 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 GPC5P78333 572 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 MPP2Q14168 576 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 TARBP2Q15633 366 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 DUOXA2Q1HG44 320 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 FOXB2Q5VYV0 432 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 NOTUMQ6P988 496 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 SLC7A6OSQ96CW6 309 aaPredicted RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 DGCR14Q96DF8 476 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 PWWP2AQ96N64 755 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 ZSWIM1Q9BR11 485 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 GANQ9H2C0 597 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 NINJ2Q9NZG7 142 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 SENP1Q9P0U3 644 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 R3HDM2Q9Y2K5 976 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 ADGRA3Q8IWK6 1321 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 COL1A2P08123 1366 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 B4GALT5O43286 388 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 LMNB2Q03252 620 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 HIC1Q14526 733 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 KRT81Q14533 505 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 TRMT5Q32P41 509 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 MAP3K21Q5TCX8 1036 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 IYDQ6PHW0 289 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 ATL2Q8NHH9 583 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 SLC35C1Q96A29 364 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 ARHGEF26Q96DR7 871 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 FAM118BQ9BPY3 351 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 NTPCRQ9BSD7 190 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 GRIP2Q9C0E4 1043 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 DNAI2Q9GZS0 605 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 Q9Y3F1 56 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 GMEB1Q9Y692 573 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 OTOFQ9HC10 1997 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 F2P00734 622 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 MT-ND3P03897 115 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 EIF4BP23588 611 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 MAGEA4P43358 317 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 MARCKSL1P49006 195 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 MTTPP55157 894 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 SCARA5Q6ZMJ2 495 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 ZNF410Q86VK4 478 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 OR6Y1Q8NGX8 325 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 C17orf50Q8WW18 174 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 ZNF75CPQ92670 426 aaPredicted RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 EMID1Q96A84 441 aaPredicted RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 TMEM106CQ9BVX2 250 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 WNT8AQ9H1J5 351 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 TSPYL2Q9H2G4 693 aaPredicted RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 ST6GALNAC4Q9H4F1 302 aa11.32□□□□□ -0.6
LSM3-201ENST00000306024 FBXO6Q9NRD1 293 aaPredicted RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 MTO1Q9Y2Z2 717 aaKnown RBP11.32□□□□□ -0.6
LSM3-201ENST00000306024 TRIM43BA6NCK2 446 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 PDLIM1O00151 329 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 XPOTO43592 962 aaKnown RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 KRT4P19013 534 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 HPCAP84074 193 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 CYTH1Q15438 398 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 CNGA3Q16281 694 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 OTOAQ7RTW8 1153 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 PATL1Q86TB9 770 aaKnown RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 CYP4X1Q8N118 509 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 KIF12Q96FN5 646 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 EPB41L4BQ9H329 900 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 GNEQ9Y223 722 aaKnown RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 TLR3O15455 904 aaKnown RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 ATMINO43313 823 aaPredicted RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 CYBAP13498 195 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 ALOX15P16050 662 aaPredicted RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 CD58P19256 250 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 RPA3P35244 121 aaPredicted RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 RFC1P35251 1148 aaPredicted RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 CYP24A1Q07973 514 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 ITGA7Q13683 1181 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 C16orf72Q14CZ0 275 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 TSHZ1Q6ZSZ6 1077 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 PALM2Q8IXS6 379 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 ART4Q93070 314 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 FAM136AQ96C01 138 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 TTC25Q96NG3 672 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 TMEM120AQ9BXJ8 343 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 MRPL1Q9BYD6 325 aaKnown RBP11.31□□□□□ -0.6
LSM3-201ENST00000306024 WHRNQ9P202 907 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 INPP5FQ9Y2H2 1132 aa11.31□□□□□ -0.6
LSM3-201ENST00000306024 WDR37Q9Y2I8 494 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms