RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 USP17L8P0C7I0 530 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 BMP3P12645 472 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 IDO1P14902 403 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 TCN1P20061 433 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 SP100P23497 879 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 ZNF135P52742 658 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 KCNQ4P56696 695 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CBFBQ13951 182 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ATP13A5Q4VNC0 1218 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 LIN52Q52LA3 116 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ULK3Q6PHR2 472 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 C1orf228Q6PIY5 440 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 CDKL3Q8IVW4 592 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 KLHL23Q8NBE8 558 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 VPS37AQ8NEZ2 397 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 LNX1Q8TBB1 728 aaPredicted RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 NCSTNQ92542 709 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 SLC5A5Q92911 643 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 PBXIP1Q96AQ6 731 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 FAR2Q96K12 515 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 DDX18Q9NVP1 670 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 SCN3BQ9NY72 215 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 TSR3Q9UJK0 312 aaKnown RBP6.62□□□□□ -1.35
VPS35-201ENST00000299138 SALL4Q9UJQ4 1053 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 KIAA1257Q9ULG3 409 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 NR2E3Q9Y5X4 410 aa6.62□□□□□ -1.35
VPS35-201ENST00000299138 ZNF487B1APH4 448 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 STX7O15400 261 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 TNFAIP8O95379 198 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 CYP2J2P51589 502 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PPM1KQ8N3J5 372 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 RASSF5Q8WWW0 418 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 TMA16Q96EY4 203 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 DNAJC18Q9H819 358 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 CACNA2D2Q9NY47 1150 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ALS2Q96Q42 1657 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 TNRC6CQ9HCJ0 1690 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 A6NJR5 290 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FAM189A1O60320 539 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PEX11AO75192 247 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 UFL1O94874 794 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PABPC4LP0CB38 370 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 RPL22P35268 128 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 GRM1Q13255 1194 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 CCNIQ14094 377 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 BBS9Q3SYG4 887 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 MFSD14BQ5SR56 506 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 DNAJC24Q6P3W2 148 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 TTC33Q6PID6 262 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 TXNDC11Q6PKC3 985 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 CLNKQ7Z7G1 428 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FITM2Q8N6M3 262 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 TEX19Q8NA77 164 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ADCY4Q8NFM4 1077 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 EPS8L3Q8TE67 593 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 EPS8L1Q8TE68 723 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 MNTQ99583 582 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 HSD17B14Q9BPX1 270 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 EIF2AK1Q9BQI3 630 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 PACSIN1Q9BY11 444 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 THAP2Q9H0W7 228 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PNPLA8Q9NP80 782 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ITGA11Q9UKX5 1188 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 CNOT11Q9UKZ1 510 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 V9GYQ6 96 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 CASZ1Q86V15 1759 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ASTN1O14525 1302 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZSCAN5CA6NGD5 496 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 TFRCP02786 760 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 NFX1Q12986 1120 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 TRIP10Q15642 601 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 DARS2Q6PI48 645 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 TMEM110Q86TL2 294 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 RSPH1Q8WYR4 309 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZNF75CPQ92670 426 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 HAS1Q92839 578 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 GJD4Q96KN9 370 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZFP42Q96MM3 310 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZNF285Q96NJ3 590 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 H2AFY2Q9P0M6 372 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 BLOC1S6Q9UL45 172 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 GRID1Q9ULK0 1009 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 C2CD2Q9Y426 696 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 KANSL1LA0AUZ9 987 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FAM25AB3EWG3 89 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FAM25CB3EWG5 89 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FAM25GB3EWG6 89 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZNF701M0R085 212 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 UBXN8O00124 270 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 NRG3P56975 720 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ACTR3P61158 418 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 POU5F1BQ06416 359 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 TRAP1Q12931 704 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 QPCTQ16769 361 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZNF284Q2VY69 593 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PRUNE1Q86TP1 453 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ECHDC2Q86YB7 292 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 SCUBE1Q8IWY4 988 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FAM9CQ8IZT9 166 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 SYNE4Q8N205 404 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms