RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 STILQ15468 1287 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 RSAD1Q9HA92 442 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 COPG2Q9UBF2 871 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 TTC3P53804 2025 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 PPP2R3CQ969Q6 453 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 FAR2Q96K12 515 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 THUMPD3Q9BV44 507 aaKnown RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 CNOT7Q9UIV1 285 aaKnown RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 PCDHGC5Q9Y5F6 944 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 AKAP3O75969 853 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF682O95780 498 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 RALAP11233 206 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 ILKAPQ9H0C8 392 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 PCDHB8Q9UN66 801 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 MED1Q15648 1581 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 SLC20A2Q08357 652 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 C16orf62Q7Z3J2 963 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 MREGQ8N565 214 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 ATP8B4Q8TF62 1192 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 FAM210AQ96ND0 272 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 KCTD14Q9BQ13 255 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 E9PBE3 544 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 ICAM1P05362 532 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 FAM58BPP0C7Q3 252 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 MYBPC2Q14324 1141 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 TTLL4Q14679 1199 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 DDR2Q16832 855 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 MROH9Q5TGP6 573 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 C21orf2O43822 256 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 MOCS2O96007 188 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 NFX1Q12986 1120 aaKnown RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 DNAJC3Q13217 504 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 USP39Q53GS9 565 aaKnown RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 GDPD5Q8WTR4 605 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 WRNIP1Q96S55 665 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 KLHL3Q9UH77 587 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 C1orf232A0A0U1RR37 186 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 NR5A2O00482 541 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 HLA-DRAP01903 254 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 SERPINH1P50454 418 aaKnown RBP10.17□□□□□ -0.78
COL6A3-201ENST00000295550 C21orf59P57076 290 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 ZSWIM7Q19AV6 140 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 FUT11Q495W5 492 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 NIF3L1Q9GZT8 377 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 PRKCBP05771 671 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 GSTM1P09488 218 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 ACAD10Q6JQN1 1059 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 KRT20P35900 424 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 RAD51Q06609 339 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 STX5Q13190 355 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 PCSK7Q16549 785 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 KRT74Q7RTS7 529 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 PID1Q7Z2X4 250 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 LRRC34Q8IZ02 419 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SPATA20Q8TB22 786 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SPATA33Q96N06 139 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 WEE2P0C1S8 567 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 TFE3P19532 575 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 DDX18Q9NVP1 670 aaKnown RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 LOC100653049A0A140TA62 436 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 FOXN3O00409 490 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 GUCY1B2O75343 617 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 KRT34O76011 436 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 CSNK2BP67870 215 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 NEDD8Q15843 81 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 OTOAQ7RTW8 1153 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 ZCCHC7Q8N3Z6 543 aaKnown RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 MLPHQ9BV36 600 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 UBXN6Q9BZV1 441 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SPASTQ9UBP0 616 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SIK3Q9Y2K2 1263 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 PSMD3O43242 534 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 TNFAIP8O95379 198 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 CUL2Q13617 745 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 R3HDM1Q15032 1099 aaKnown RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 YTHDF3Q7Z739 585 aaKnown RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 CD302Q8IX05 232 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 RNFT2Q96EX2 444 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 FSBPO95073 299 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 ALOX12P18054 663 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 ARID3BQ8IVW6 561 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SIX5Q8N196 739 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 DCUN1D5Q9BTE7 237 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 LRCH1Q9Y2L9 728 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 FRMPD4Q14CM0 1322 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 PDE9AO76083 593 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 RGS4P49798 205 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 ADARP55265 1226 aaKnown RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 TRAF2Q12933 501 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 FAM111AQ96PZ2 611 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 DYRK4Q9NR20 520 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 NCANO14594 1321 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 KIF13AQ9H1H9 1805 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 TRIM49D1C9J1S8 452 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 ATP9AO75110 1047 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 GHRP10912 638 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 TGM2P21980 687 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SERPINB8P50452 374 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 PDK1Q15118 436 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 MIIPQ5JXC2 388 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms