RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 TRIM7Q9C029 511 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 TBC1D13Q9NVG8 400 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 TET1Q8NFU7 2136 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 TLDC2A0PJX2 215 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 GOLGA8SH3BPF8 625 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 XPO1O14980 1071 aaKnown RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 ERBB2P04626 1255 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 PFKMP08237 780 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 PDE4CQ08493 712 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 ITIH4Q14624 930 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 PSRC1Q6PGN9 363 aaPredicted RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 OTOP2Q7RTS6 562 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 OSTM1Q86WC4 334 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 TTC30AQ86WT1 665 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 NPAS4Q8IUM7 802 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 SUGP1Q8IWZ8 645 aaKnown RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 COLGALT2Q8IYK4 626 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 RCOR2Q8IZ40 523 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 C3orf58Q8NDZ4 430 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 SLC2A14Q8TDB8 520 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 EPS8L3Q8TE67 593 aaKnown RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 SELENOSQ9BQE4 189 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 SYT15Q9BQS2 421 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 DUSP16Q9BY84 665 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 OSBPL8Q9BZF1 889 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 NSRP1Q9H0G5 558 aaKnown RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 INTS9Q9NV88 658 aaKnown RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 PCDHB8Q9UN66 801 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 NME7Q9Y5B8 376 aa17.53■□□□□ 0.4
CPSF4-201ENST00000292476 TDRD15B5MCY1 1934 aaKnown RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 LAMA2P24043 3122 aaKnown RBP17.53■□□□□ 0.4
CPSF4-201ENST00000292476 RALAP11233 206 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 ADORA2BP29275 332 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 RPL34P49207 117 aaKnown RBP17.52■□□□□ 0.4
CPSF4-201ENST00000292476 RPL7AP62424 266 aaKnown RBP17.52■□□□□ 0.4
CPSF4-201ENST00000292476 IKBKEQ14164 716 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 QPCTQ16769 361 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 FAM102AQ5T9C2 384 aaPredicted RBP17.52■□□□□ 0.4
CPSF4-201ENST00000292476 RNF187Q5TA31 235 aaPredicted RBP17.52■□□□□ 0.4
CPSF4-201ENST00000292476 OR6B2Q6IFH4 312 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 CNKSR3Q6P9H4 555 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 MED10Q9BTT4 135 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 KDM4CQ9H3R0 1056 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 LGALS13Q9UHV8 139 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 ANAPC5Q9UJX4 755 aa17.52■□□□□ 0.4
CPSF4-201ENST00000292476 GOLGA6L7A0A1B0GV03 622 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 E5RJQ4 531 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 RNF8O76064 485 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 FGBP02675 491 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 ABHD2P08910 425 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 FAM200BP0CF97 657 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 CCDC130P13994 396 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 NPR3P17342 541 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 PSMA2P25787 234 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 ITGA8P53708 1063 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 IFI35P80217 286 aaPredicted RBP17.52■□□□□ 0.39
CPSF4-201ENST00000292476 SNX1Q13596 522 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 HADHQ16836 314 aaKnown RBP17.52■□□□□ 0.39
CPSF4-201ENST00000292476 OVOS1Q6IE37 1185 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 PMF1Q6P1K2 205 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 ARCQ7LC44 396 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 CCDC25Q86WR0 208 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 CCDC50Q8IVM0 306 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 ANKS4BQ8N8V4 417 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 CCDC197Q8NCU1 140 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 MDM1Q8TC05 714 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 LRCH3Q96II8 777 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 PAAF1Q9BRP4 392 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 COLEC11Q9BWP8 271 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 ASNSD1Q9NWL6 643 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 DDX56Q9NY93 547 aaKnown RBP17.52■□□□□ 0.39
CPSF4-201ENST00000292476 CAPN7Q9Y6W3 813 aa17.52■□□□□ 0.39
CPSF4-201ENST00000292476 EFCAB14O75071 495 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 DDHD2O94830 711 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 ALDH2P05091 517 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 RFC1P35251 1148 aaPredicted RBP17.51■□□□□ 0.39
CPSF4-201ENST00000292476 ADCY8P40145 1251 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 SSR1P43307 286 aaKnown RBP17.51■□□□□ 0.39
CPSF4-201ENST00000292476 OR1G1P47890 313 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 TAS2R40P59535 323 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 TSPY1Q01534 308 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 SLC6A3Q01959 620 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 LRIT3Q3SXY7 679 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 LLGL2Q6P1M3 1020 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 RIBC1Q8N443 379 aaPredicted RBP17.51■□□□□ 0.39
CPSF4-201ENST00000292476 ATG4AQ8WYN0 398 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 KCTD13Q8WZ19 329 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 CCDC114Q96M63 670 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 TMEM175Q9BSA9 504 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 HERPUD2Q9BSE4 406 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 METTL5Q9NRN9 209 aaKnown RBP17.51■□□□□ 0.39
CPSF4-201ENST00000292476 CXXC1Q9P0U4 656 aaPredicted RBP17.51■□□□□ 0.39
CPSF4-201ENST00000292476 CACNG4Q9UBN1 327 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 ACTL7BQ9Y614 415 aa17.51■□□□□ 0.39
CPSF4-201ENST00000292476 CARNS1A5YM72 827 aa17.5■□□□□ 0.39
CPSF4-201ENST00000292476 SYN3O14994 580 aa17.5■□□□□ 0.39
CPSF4-201ENST00000292476 TADA2AO75478 443 aa17.5■□□□□ 0.39
CPSF4-201ENST00000292476 KRT7P08729 469 aa17.5■□□□□ 0.39
CPSF4-201ENST00000292476 YWHAHQ04917 246 aaPredicted RBP17.5■□□□□ 0.39
CPSF4-201ENST00000292476 ELAVL2Q12926 359 aaKnown RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms