RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 BTBD8Q5XKL5 378 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 OR6B2Q6IFH4 312 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 TRIM72Q6ZMU5 477 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 FAM183BPQ6ZVS7 135 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 PHLDB2Q86SQ0 1253 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 ERICH1Q86X53 443 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 ARHGAP18Q8N392 663 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 CELF5Q8N6W0 485 aaKnown RBP13.38□□□□□ -0.27
SS18-202ENST00000269138 SH3RF2Q8TEC5 729 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 WBP2Q969T9 261 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 NXPE3Q969Y0 559 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 MRFAP1L1Q96HT8 127 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 ZFRQ96KR1 1074 aaKnown RBP13.38□□□□□ -0.27
SS18-202ENST00000269138 NUCKS1Q9H1E3 243 aaKnown RBP13.38□□□□□ -0.27
SS18-202ENST00000269138 SYNCQ9H7C4 482 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 ARHGAP26Q9UNA1 814 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 VCANP13611 3396 aa13.38□□□□□ -0.27
SS18-202ENST00000269138 MYO10Q9HD67 2058 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 LEFTY2O00292 366 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 DDX3XO00571 662 aaKnown RBP eCLIP13.37□□□□□ -0.271e-15■■■□□ 17.7
SS18-202ENST00000269138 SCAMP3O14828 347 aaKnown RBP13.37□□□□□ -0.27
SS18-202ENST00000269138 LTFP02788 710 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 FYNP06241 537 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 ATP5C1P36542 298 aaKnown RBP13.37□□□□□ -0.27
SS18-202ENST00000269138 GABRB2P47870 512 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 GPC5P78333 572 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 EFEMP1Q12805 493 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 TRIM14Q14142 442 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 ZNF268Q14587 947 aaPredicted RBP13.37□□□□□ -0.27
SS18-202ENST00000269138 MMS22LQ6ZRQ5 1243 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 DNAAF5Q86Y56 855 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 FMNL3Q8IVF7 1028 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 MFSD6LQ8IWD5 586 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 ZNF276Q8N554 614 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 C18orf8Q96DM3 657 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 NACA2Q9H009 215 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 TAS2R14Q9NYV8 317 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 SORCS3Q9UPU3 1222 aa13.37□□□□□ -0.27
SS18-202ENST00000269138 MFAP3LO75121 409 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 GRAP2O75791 330 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 PTP4A2Q12974 167 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 ZNF77Q15935 545 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 TDRD12Q587J7 1177 aaKnown RBP13.36□□□□□ -0.27
SS18-202ENST00000269138 WDR59Q6PJI9 974 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 OLFML1Q6UWY5 402 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 RSRC2Q7L4I2 434 aaKnown RBP13.36□□□□□ -0.27
SS18-202ENST00000269138 XYLT1Q86Y38 959 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 MIB1Q86YT6 1006 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 OR8K1Q8NGG5 319 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 BPIFB1Q8TDL5 484 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 IPO4Q8TEX9 1081 aaKnown RBP13.36□□□□□ -0.27
SS18-202ENST00000269138 E2F7Q96AV8 911 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 FAM149B1Q96BN6 582 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 ZFYVE19Q96K21 471 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 DNAJC7Q99615 494 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 C11orf70Q9BRQ4 267 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 KLF16Q9BXK1 252 aaPredicted RBP13.36□□□□□ -0.27
SS18-202ENST00000269138 ABCC13Q9NSE7 274 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 OBP2AQ9NY56 170 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 CFAP97Q9P2B7 532 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 RASAL2Q9UJF2 1139 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 DNMT3LQ9UJW3 386 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 NAALADL1Q9UQQ1 740 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 MYO16Q9Y6X6 1858 aa13.36□□□□□ -0.27
SS18-202ENST00000269138 TMCO5BA8MYB1 307 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 GOLGA8SH3BPF8 625 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 SART1O43290 800 aaKnown RBP13.35□□□□□ -0.27
SS18-202ENST00000269138 ADCY5O95622 1261 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 SERPING1P05155 500 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 IRF1P10914 325 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 PSMC3P17980 439 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 MMP8P22894 467 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 GDI1P31150 447 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 HNRNPH3P31942 346 aaKnown RBP13.35□□□□□ -0.27
SS18-202ENST00000269138 SLC6A3Q01959 620 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 CENPCQ03188 943 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 USP4Q13107 963 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 ARID5BQ14865 1188 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 IER5LQ5T953 404 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 SYPL2Q5VXT5 272 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 ACAD10Q6JQN1 1059 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 KLHDC10Q6PID8 442 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 RNF139Q8WU17 664 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 ASIC4Q96FT7 647 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 TRMT61BQ9BVS5 477 aaKnown RBP13.35□□□□□ -0.27
SS18-202ENST00000269138 KIF9Q9HAQ2 790 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 MARCH2Q9P0N8 246 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 ARHGAP20Q9P2F6 1191 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 SFMBT1Q9UHJ3 866 aa13.35□□□□□ -0.27
SS18-202ENST00000269138 AKR1B15C9JRZ8 316 aaPredicted RBP13.34□□□□□ -0.27
SS18-202ENST00000269138 HMBSP08397 361 aa13.34□□□□□ -0.27
SS18-202ENST00000269138 TPM1P09493 284 aa13.34□□□□□ -0.27
SS18-202ENST00000269138 NCAM1P13591 858 aa13.34□□□□□ -0.27
SS18-202ENST00000269138 NSFP46459 744 aaKnown RBP13.34□□□□□ -0.27
SS18-202ENST00000269138 SNX16P57768 344 aa13.34□□□□□ -0.27
SS18-202ENST00000269138 RNASE9P60153 205 aaKnown RBP13.34□□□□□ -0.27
SS18-202ENST00000269138 YWHAZP63104 245 aaKnown RBP13.34□□□□□ -0.27
SS18-202ENST00000269138 PITX1P78337 314 aaPredicted RBP13.34□□□□□ -0.27
SS18-202ENST00000269138 ZXDAP98168 799 aa13.34□□□□□ -0.27
SS18-202ENST00000269138 FCHO2Q0JRZ9 810 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms