RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 PAFAH2Q99487 392 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 DPEP3Q9H4B8 488 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 C10orf88Q9H8K7 445 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 NKIRAS1Q9NYS0 192 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 FLRT1Q9NZU1 646 aa11.62□□□□□ -0.55
MSH3-201ENST00000265081 IFNAR2P48551 515 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 EFTUD2Q15029 972 aaKnown RBP eCLIP11.61□□□□□ -0.55
MSH3-201ENST00000265081 SNX17Q15036 470 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 KIZQ2M2Z5 673 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 RNF187Q5TA31 235 aaPredicted RBP11.61□□□□□ -0.55
MSH3-201ENST00000265081 STEAP4Q687X5 459 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 FBF1Q8TES7 1133 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 PPP1R10Q96QC0 940 aaKnown RBP11.61□□□□□ -0.55
MSH3-201ENST00000265081 SLC2A13Q96QE2 648 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 NRDE2Q9H7Z3 1164 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 ARHGEF3Q9NR81 526 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 KLC4Q9NSK0 619 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 SMIM28A0A1B0GU29 152 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 A0A1W2PPM1 405 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 TRDMT1O14717 391 aaKnown RBP11.61□□□□□ -0.55
MSH3-201ENST00000265081 APOL1O14791 398 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 XPO1O14980 1071 aaKnown RBP11.61□□□□□ -0.55
MSH3-201ENST00000265081 DYNLT1P63172 113 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 SLC1A5Q15758 541 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 OR6B2Q6IFH4 312 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 FAM228AQ86W67 206 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 PYROXD1Q8WU10 500 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 HNRNPABQ99729 332 aaKnown RBP11.61□□□□□ -0.55
MSH3-201ENST00000265081 NXF3Q9H4D5 531 aaKnown RBP11.61□□□□□ -0.55
MSH3-201ENST00000265081 KLF11O14901 512 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 RECQL4O94761 1208 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 VIMP08670 466 aaKnown RBP11.61□□□□□ -0.55
MSH3-201ENST00000265081 ADCY1Q08828 1119 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 SPARCL1Q14515 664 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 MFSD10Q14728 455 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 FBXO47Q5MNV8 452 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 CYB5D1Q6P9G0 228 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 ACOT1Q86TX2 421 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 ECHDC2Q86YB7 292 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 FITM2Q8N6M3 262 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 C10orf82Q8WW14 230 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 KIF9Q9HAQ2 790 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 TBK1Q9UHD2 729 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 FZD10Q9ULW2 581 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 CASP8AP2Q9UKL3 1982 aa11.61□□□□□ -0.55
MSH3-201ENST00000265081 ZFXP17010 805 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 TFE3P19532 575 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 SSTR1P30872 391 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 STX2P32856 288 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 CRYBB1P53674 252 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 ELF3P78545 371 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 SLC10A2Q12908 348 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 SEMA5AQ13591 1074 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 RMDN2Q96LZ7 410 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 ZNF560Q96MR9 790 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 SMC6Q96SB8 1091 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 VPS11Q9H270 941 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 EIF2B3Q9NR50 452 aaKnown RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 ETNK2Q9NVF9 386 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 TCRBV9S1A1TA0A576 114 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 HACD1B0YJ81 288 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 DAB1O75553 588 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 SDC4P31431 198 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 SOX4Q06945 474 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 MAP2K5Q13163 448 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 PRKD1Q15139 912 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 SLC45A4Q5BKX6 768 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 NUGGCQ68CJ6 796 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 NCBP2-AS2Q69YL0 99 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 C3orf62Q6ZUJ4 267 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 PDIK1LQ8N165 341 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 KLHL14Q9P2G3 628 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 KPNA7A9QM74 516 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 ALDH1A2O94788 518 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 PAQR9Q6ZVX9 377 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 ANKMY2Q8IV38 441 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 KLHDC8BQ8IXV7 354 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 KCTD15Q96SI1 283 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 PPP1R16BQ96T49 567 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 SNX9Q9Y5X1 595 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 C9IYK1 514 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 RDXP35241 583 aaKnown RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 GJA9P57773 515 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 ZNF449Q6P9G9 518 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 PGAP3Q96FM1 320 aaPredicted RBP11.6□□□□□ -0.55
MSH3-201ENST00000265081 CYTH2Q99418 400 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 VPS37BQ9H9H4 285 aa11.6□□□□□ -0.55
MSH3-201ENST00000265081 TRAFD1O14545 582 aaPredicted RBP11.59□□□□□ -0.55
MSH3-201ENST00000265081 UBOX5O94941 541 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 ELK3P41970 407 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 PSEN2P49810 448 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 RAB41Q5JT25 222 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 WLSQ5T9L3 541 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 FAM91A1Q658Y4 838 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 RPAINQ86UA6 219 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 CDKL3Q8IVW4 592 aaPredicted RBP11.59□□□□□ -0.55
MSH3-201ENST00000265081 CALN1Q9BXU9 219 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 KCNK9Q9NPC2 374 aa11.59□□□□□ -0.55
MSH3-201ENST00000265081 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.59□□□□□ -0.55
MSH3-201ENST00000265081 FAM159BA6NKW6 160 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms