RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 NVLO15381 856 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 FAM189A1O60320 539 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 TOM1L1O75674 476 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 LSM8O95777 96 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 APRTP07741 180 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 DLDP09622 509 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 HOXC6P09630 235 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 ATP6V1C1P21283 382 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 EIF4BP23588 611 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 TCF7P36402 384 aaPredicted RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 GMPRP36959 345 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 MAGEA8P43361 318 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 CCNG1P51959 295 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 SLC18A1P54219 525 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 CDK16Q00536 496 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 ROR1Q01973 937 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 WASHC2DQ5SRD0 308 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 SPRYD7Q5W111 196 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 SCG3Q8WXD2 468 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 DHRS4Q9BTZ2 278 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 SHCBP1LQ9BZQ2 653 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 ZCWPW1Q9H0M4 648 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 DCLRE1BQ9H816 532 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 MAD1L1Q9Y6D9 718 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 IQANK1A0A1B0GTG1 560 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 MEI4A8MW99 385 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 B2RBV5 119 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 RNF8O76064 485 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 ATG7O95352 703 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 PIGRP01833 764 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 FESP07332 822 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 NFICP08651 508 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 ETV4P43268 484 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 ALDH18A1P54886 795 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 MXRA7P84157 204 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 TMPRSS15P98073 1019 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 LAMTOR4Q0VGL1 99 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 PRKD1Q15139 912 aaPredicted RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 RASA2Q15283 850 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 MROH9Q5TGP6 573 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 CST9Q5W186 159 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 TRNP1Q6NT89 227 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.45□□□□□ -0.745e-6■■■■■ 81.8
LIG3-201ENST00000262327 UNC5BQ8IZJ1 945 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 DNERQ8NFT8 737 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 CCDC110Q8TBZ0 833 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 OXNAD1Q96HP4 312 aaPredicted RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 HEXIM2Q96MH2 286 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 ACO2Q99798 780 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 EPAS1Q99814 870 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 DDX50Q9BQ39 737 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 ADPGKQ9BRR6 497 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 MRPL4Q9BYD3 311 aaKnown RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 VPS11Q9H270 941 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 SMYD2Q9NRG4 433 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 PCMTD2Q9NV79 361 aa10.45□□□□□ -0.74
LIG3-201ENST00000262327 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.45□□□□□ -0.74
LIG3-201ENST00000262327 CORO1CQ9ULV4 474 aaPredicted RBP10.45□□□□□ -0.74
LIG3-201ENST00000262327 OGTO15294 1046 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TM9SF1O15321 606 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 AHCYL1O43865 530 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 MICAL2O94851 1124 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TRUB2O95900 331 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 ITGB3P05106 788 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 F7P08709 466 aaPredicted RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 RBL1P28749 1068 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 GRIA1P42261 906 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 YWHAEP62258 255 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 IGBP1P78318 339 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 BST1Q10588 318 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CHI3L2Q15782 390 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 HSF5Q4G112 596 aaPredicted RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 PPP6R3Q5H9R7 873 aaPredicted RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 RNF220Q5VTB9 566 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CWF19L1Q69YN2 538 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 OR6B2Q6IFH4 312 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CCDC62Q6P9F0 684 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TRMT10BQ6PF06 316 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 LMNTD2Q8IXW0 634 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 C12orf29Q8N999 325 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 SHCBP1Q8NEM2 672 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 APOPT1Q96IL0 206 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CDHR1Q96JP9 859 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 MMP19Q99542 508 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 C20orf27Q9GZN8 174 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 ELOVL4Q9GZR5 314 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 MINDY3Q9H8M7 445 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 NGRNQ9NPE2 291 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 RBPJLQ9UBG7 517 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 CCL15-CCL14A0A0B4J2E2 113 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 A6NHS1 94 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 E7ESA3 106 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 APOC4-APOC2K7ER74 178 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 LUC7L3O95232 432 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 APOC2P02655 101 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 HMGCRP04035 888 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 SETSIPP0DME0 302 aa10.44□□□□□ -0.74
LIG3-201ENST00000262327 POLR2BP30876 1174 aaKnown RBP10.44□□□□□ -0.74
LIG3-201ENST00000262327 PGM1P36871 562 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms