RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 KIAA1257Q9ULG3 409 aa19.45■□□□□ 0.7
CPSF3-201ENST00000238112 WDR90Q96KV7 1748 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 BCLAF3A2AJT9 711 aaKnown RBP19.44■□□□□ 0.7
CPSF3-201ENST00000238112 C2orf71A6NGG8 1288 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 SOCS7O14512 581 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 IL4RP24394 825 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 RGS7P49802 495 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 BLMHQ13867 455 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 CCDC6Q16204 474 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 FBXO16Q8IX29 292 aaPredicted RBP19.44■□□□□ 0.7
CPSF3-201ENST00000238112 PQLC3Q8N755 202 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 FAM172AQ8WUF8 416 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 CNKSR2Q8WXI2 1034 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 APBB2Q92870 758 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 CPB2Q96IY4 423 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 PPP1R16BQ96T49 567 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 PDZD7Q9H5P4 517 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 IFT122Q9HBG6 1241 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 PCDH18Q9HCL0 1135 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 PLLPQ9Y342 182 aa19.44■□□□□ 0.7
CPSF3-201ENST00000238112 FAM237BA0A1B0GVD1 139 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 CXorf49A8MYA2 514 aaPredicted RBP19.43■□□□□ 0.7
CPSF3-201ENST00000238112 MAP3K6O95382 1288 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 C1QAP02745 245 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 PRKCHP24723 683 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 SDC4P31431 198 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 GOLGA7BQ2TAP0 167 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 SLC10A6Q3KNW5 377 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 KHDC1Q4VXA5 237 aaKnown RBP19.43■□□□□ 0.7
CPSF3-201ENST00000238112 ATG16L1Q676U5 607 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 DSTYKQ6XUX3 929 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 APBB1IPQ7Z5R6 666 aaPredicted RBP19.43■□□□□ 0.7
CPSF3-201ENST00000238112 CAND1Q86VP6 1230 aaKnown RBP19.43■□□□□ 0.7
CPSF3-201ENST00000238112 TTC39CQ8N584 583 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 TEKT4Q8WW24 435 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 COPS5Q92905 334 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 GBA2Q9HCG7 927 aaPredicted RBP19.43■□□□□ 0.7
CPSF3-201ENST00000238112 STOML1Q9UBI4 398 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 ITGA11Q9UKX5 1188 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 MGAMO43451 1857 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 FCHO1O14526 889 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 SMNDC1O75940 238 aaKnown RBP eCLIP19.43■□□□□ 0.7
CPSF3-201ENST00000238112 KRT38O76015 456 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 APOEP02649 317 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 RBP5P82980 135 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 TMPRSS15P98073 1019 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 FAM187BQ17R55 369 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 PCDH19Q8TAB3 1148 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 CCDC110Q8TBZ0 833 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 LRRC39Q96DD0 335 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 SLC13A1Q9BZW2 595 aa19.43■□□□□ 0.7
CPSF3-201ENST00000238112 A0A087WZ62 844 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 DPYSL4O14531 572 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 C22orf31O95567 290 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 GSTA2P09210 222 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 ATP6V1C1P21283 382 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 SLC9A4Q6AI14 798 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 RINLQ6ZS11 566 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 TTC7BQ86TV6 843 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 LMNTD2Q8IXW0 634 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.42■□□□□ 0.7
CPSF3-201ENST00000238112 C12orf29Q8N999 325 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 ARMC2Q8NEN0 867 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 TBCBQ99426 244 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 FDXACB1Q9BRP7 624 aaPredicted RBP19.42■□□□□ 0.7
CPSF3-201ENST00000238112 MECRQ9BV79 373 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 SNRNP25Q9BV90 132 aaKnown RBP19.42■□□□□ 0.7
CPSF3-201ENST00000238112 R3HDMLQ9H3Y0 253 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 KCNK4Q9NYG8 393 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 PFKMP08237 780 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 TXNP10599 105 aaKnown RBP19.42■□□□□ 0.7
CPSF3-201ENST00000238112 ABL2P42684 1182 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 MAGEA6P43360 314 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 SESN3P58005 492 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 BMPR2Q13873 1038 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 STILQ15468 1287 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 KYAT1Q16773 422 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 MUM1Q2TAK8 710 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 PPP6R3Q5H9R7 873 aaPredicted RBP19.42■□□□□ 0.7
CPSF3-201ENST00000238112 CDKL3Q8IVW4 592 aaPredicted RBP19.42■□□□□ 0.7
CPSF3-201ENST00000238112 CFAP61Q8NHU2 1237 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 DNAJC9Q8WXX5 260 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 E2F7Q96AV8 911 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 MTBPQ96DY7 904 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 SPDL1Q96EA4 605 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 C7orf26Q96N11 449 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 NMUR2Q9GZQ4 415 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 DPP3Q9NY33 737 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 ERAP1Q9NZ08 941 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 CSADQ9Y600 493 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 MAD1L1Q9Y6D9 718 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 A0A0G2JMZ2 1700 aa19.42■□□□□ 0.7
CPSF3-201ENST00000238112 SLC15A5A6NIM6 579 aa19.41■□□□□ 0.7
CPSF3-201ENST00000238112 SLC25A27O95847 323 aa19.41■□□□□ 0.7
CPSF3-201ENST00000238112 CCNFP41002 786 aa19.41■□□□□ 0.7
CPSF3-201ENST00000238112 KPNB1Q14974 876 aaKnown RBP19.41■□□□□ 0.7
CPSF3-201ENST00000238112 AMHR2Q16671 573 aa19.41■□□□□ 0.7
CPSF3-201ENST00000238112 CMPK2Q5EBM0 449 aa19.41■□□□□ 0.7
CPSF3-201ENST00000238112 CAPRIN2Q6IMN6 1127 aaKnown RBP19.41■□□□□ 0.7
CPSF3-201ENST00000238112 OLFML1Q6UWY5 402 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms