RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 NUP98P52948 1817 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 HNRNPCL2B2RXH8 293 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 STRNO43815 780 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 CLASP2O75122 1294 aaKnown RBP11.89□□□□□ -0.51
NOD1-201ENST00000222823 SRP72O76094 671 aaKnown RBP11.89□□□□□ -0.51
NOD1-201ENST00000222823 MYBL2P10244 700 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 MAP3K7CLP57077 242 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 LRRC74AQ0VAA2 488 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 SGO1Q5FBB7 561 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 CLEC4FQ8N1N0 589 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 TEKT4Q8WW24 435 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 WNK4Q96J92 1243 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 FAM53CQ9NYF3 392 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 F5H5T6 163 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 KRT16P08779 473 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 NDST1P52848 882 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 COPAP53621 1224 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 SKIV2LQ15477 1246 aaKnown RBP11.89□□□□□ -0.51
NOD1-201ENST00000222823 C3orf20Q8ND61 904 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 PCDH9Q9HC56 1237 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 SNTG2Q9NY99 539 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 DCDC2Q9UHG0 476 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 SLC24A2Q9UI40 661 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 MYH6P13533 1939 aa11.89□□□□□ -0.51
NOD1-201ENST00000222823 TRPC5OSA6NMA1 111 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 C2orf81A6NN90 581 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 RPLP2P05387 115 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 ZNF286BP0CG31 522 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 TKTL1P51854 596 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 HDAC4P56524 1084 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 KCNK10P57789 538 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 STX5Q13190 355 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 KRT72Q14CN4 511 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 TTLL9Q3SXZ7 439 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 BRSK2Q8IWQ3 736 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 TBC1D19Q8N5T2 526 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 PCSK9Q8NBP7 692 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 ETNPPLQ8TBG4 499 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 TRAPPC12Q8WVT3 735 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 CCDC134Q9H6E4 229 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 SLC40A1Q9NP59 571 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 ITGA11Q9UKX5 1188 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 BAZ2AQ9UIF9 1905 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 HEATR9A2RTY3 570 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 ZBTB22O15209 634 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 PPP1R11O60927 126 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 FKBP9O95302 570 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 CKMP06732 381 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 PYGMP11217 842 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 CDH2P19022 906 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 ALDH5A1P51649 535 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 ZNF268Q14587 947 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 CTXN3Q4LDR2 81 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 ZC3H12BQ5HYM0 836 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 C16orf87Q6PH81 154 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 FKBP9P1Q75LS8 142 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 MAP4K3Q8IVH8 894 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 DNAJC9Q8WXX5 260 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 ELMO3Q96BJ8 720 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 ZBTB45Q96K62 511 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 ADNPQ9H2P0 1102 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 ABHD16BQ9H3Z7 469 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 IL1RL2Q9HB29 575 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 LRRC4BQ9NT99 713 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 TRMT6Q9UJA5 497 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 SHOC2Q9UQ13 582 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 NKRFO15226 690 aaKnown RBP eCLIP11.88□□□□□ -0.51
NOD1-201ENST00000222823 TARSP26639 723 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 RPL10AP62906 217 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 GRIK4Q16099 956 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 GRAMD4Q6IC98 578 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 TIGD7Q6NT04 549 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 TSEN2Q8NCE0 465 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 HASPINQ8TF76 798 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 USP13Q92995 863 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 TBCBQ99426 244 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 BRD8Q9H0E9 1235 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 SPDYE5A6NIY4 337 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 C5orf58C9J3I9 102 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 SKAP2O75563 359 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 ASS1P00966 412 aaKnown RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 CDH8P55286 799 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 ERVK-9P63128 1117 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 SPDYE7PQ495Y7 208 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 AASDHQ4L235 1098 aaPredicted RBP11.88□□□□□ -0.51
NOD1-201ENST00000222823 CBWD6Q4V339 395 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 CBWD3Q5JTY5 395 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 CBWD5Q5RIA9 395 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 HGSNATQ68CP4 663 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 FAM198AQ9UFP1 575 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 DSEQ9UL01 958 aa11.88□□□□□ -0.51
NOD1-201ENST00000222823 PIK3CDO00329 1044 aa11.87□□□□□ -0.51
NOD1-201ENST00000222823 LRG1P02750 347 aa11.87□□□□□ -0.51
NOD1-201ENST00000222823 FAM153BP0C7A2 387 aa11.87□□□□□ -0.51
NOD1-201ENST00000222823 CSE1LP55060 971 aaKnown RBP11.87□□□□□ -0.51
NOD1-201ENST00000222823 SKOR1P84550 965 aa11.87□□□□□ -0.51
NOD1-201ENST00000222823 EFEMP1Q12805 493 aa11.87□□□□□ -0.51
NOD1-201ENST00000222823 BMT2Q1RMZ1 405 aa11.87□□□□□ -0.51
NOD1-201ENST00000222823 FAM153CQ494X1 144 aa11.87□□□□□ -0.51
NOD1-201ENST00000222823 ZCWPW2Q504Y3 356 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms