RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 TCF3P15923 654 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 PFKLP17858 780 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 TIE1P35590 1138 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 MXI1P50539 228 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 NUCB2P80303 420 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 INCA1Q0VD86 236 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 LRMPQ12912 555 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 ANO4Q32M45 955 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 EDRF1Q3B7T1 1238 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 FBXO43Q4G163 708 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 CBWD6Q4V339 395 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 CBWD3Q5JTY5 395 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 CBWD5Q5RIA9 395 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 PPP1R26Q5T8A7 1209 aaPredicted RBP10.87□□□□□ -0.67
SCN1A-222ENST00000642141 ZNF658Q5TYW1 1059 aaPredicted RBP10.87□□□□□ -0.67
SCN1A-222ENST00000642141 TMEM25Q86YD3 366 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 GAB3Q8WWW8 586 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 OVCA2Q8WZ82 227 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 BHMTQ93088 406 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 TSG101Q99816 390 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 ARRDC1-AS1Q9H2J1 176 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 SMOC1Q9H4F8 434 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 CYP3A43Q9HB55 503 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 NMUR1Q9HB89 426 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 CSNK1G1Q9HCP0 422 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 TLR8Q9NR97 1041 aaKnown RBP10.87□□□□□ -0.67
SCN1A-222ENST00000642141 CISHQ9NSE2 258 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 SEMA4GQ9NTN9 838 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 RAB20Q9NX57 234 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 CIZ1Q9ULV3 898 aaPredicted RBP10.87□□□□□ -0.67
SCN1A-222ENST00000642141 DNAH14Q0VDD8 3507 aa10.87□□□□□ -0.67
SCN1A-222ENST00000642141 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 E2F8A0AVK6 867 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 MED19A0JLT2 244 aaPredicted RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 BIN1O00499 593 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 TRIM24O15164 1050 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 GDF9O60383 454 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 GADD45BO75293 160 aaPredicted RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 CILPO75339 1184 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 KAT7O95251 611 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 KLF8O95600 359 aaPredicted RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 APBB3O95704 486 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 ADH1CP00326 375 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 ZDHHC11BP0C7U3 371 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 CD44P16070 742 aaKnown RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 TRIM21P19474 475 aaKnown RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 HOXA6P31267 233 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 GTF2H1P32780 548 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 CNR2P34972 360 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 DGKEP52429 567 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 ATXN1P54253 815 aaKnown RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 PUM1Q14671 1186 aaKnown RBP eCLIP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 SF3A2Q15428 464 aaKnown RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 C10orf120Q5SQS8 335 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 SNX30Q5VWJ9 437 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 ANO7Q6IWH7 933 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 KLHL10Q6JEL2 608 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 SYT13Q7L8C5 426 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 DDX42Q86XP3 938 aaKnown RBP eCLIP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 ALLCQ8N6M5 410 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 FBXL13Q8NEE6 735 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 USP33Q8TEY7 942 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 NDRG1Q92597 394 aaKnown RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 GSDMAQ96QA5 445 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 PNKPQ96T60 521 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 TPSD1Q9BZJ3 242 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 FBXO44Q9H4M3 255 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 ARHGEF4Q9NR80 690 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 NAGPAQ9UK23 515 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 CDV3Q9UKY7 258 aaKnown RBP10.86□□□□□ -0.67
SCN1A-222ENST00000642141 SCML2Q9UQR0 700 aa10.86□□□□□ -0.67
SCN1A-222ENST00000642141 FAM92AA1XBS5 289 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 STX10O60499 249 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 CALCAP01258 141 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 APODP05090 189 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 HMBSP08397 361 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 RARGP13631 454 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 HNRNPLP14866 589 aaKnown RBP eCLIP10.85□□□□□ -0.673e-6■■□□□ 12.6
SCN1A-222ENST00000642141 KCNA4P22459 653 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 GBP1P32455 592 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 ATP5C1P36542 298 aaKnown RBP10.85□□□□□ -0.67
SCN1A-222ENST00000642141 RAD23BP54727 409 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 FKBP3Q00688 224 aaKnown RBP10.85□□□□□ -0.67
SCN1A-222ENST00000642141 LMNB2Q03252 620 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 BTBD8Q5XKL5 378 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 TPGS1Q6ZTW0 290 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 ERMP1Q7Z2K6 904 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 CACNA2D4Q7Z3S7 1137 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 SCD5Q86SK9 330 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 MIB1Q86YT6 1006 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 CAMKK1Q8N5S9 505 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 GPR161Q8N6U8 529 aaKnown RBP10.85□□□□□ -0.67
SCN1A-222ENST00000642141 SLC4A11Q8NBS3 891 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 TXNDC5Q8NBS9 432 aaKnown RBP10.85□□□□□ -0.67
SCN1A-222ENST00000642141 TSTD1Q8NFU3 115 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 ACDQ96AP0 544 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 TMEM176AQ96HP8 235 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 KLF16Q9BXK1 252 aaPredicted RBP10.85□□□□□ -0.67
SCN1A-222ENST00000642141 DUSP16Q9BY84 665 aa10.85□□□□□ -0.67
SCN1A-222ENST00000642141 COMMD8Q9NX08 183 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms