RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ULK3Q6PHR2 472 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 KCNK18Q7Z418 384 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF669Q96BR6 464 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ZMYND12Q9H0C1 365 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 INTS2Q9H0H0 1204 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SLC12A5Q9H2X9 1139 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MTMR4Q9NYA4 1195 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SLC12A4Q9UP95 1085 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 A0A1W2PQ67 120 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SUPT3HB4E1H0 165 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 KBTBD13C9JR72 458 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PRSS44E7EML9 344 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TBC1D4O60343 1298 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TMIGD3P0DMS9 266 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ARL3P36405 182 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CDC34P49427 236 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 BTG3Q14201 252 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MZT2BQ6NZ67 158 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CDKL3Q8IVW4 592 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GALNT15Q8N3T1 639 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SLC26A7Q8TE54 656 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 C5orf34Q96MH7 638 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 KLF6Q99612 283 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 C19orf43Q9BQ61 176 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM120AQ9BXJ8 343 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TOR3AQ9H497 397 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SCGB2A1O75556 95 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 BEST1O76090 585 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ANP32DO95626 131 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CYP2A6P11509 494 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 AKT1P31749 480 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 RABIFP47224 123 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ACADVLP49748 655 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NUBP1P53384 320 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PER3P56645 1201 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 HSF2Q03933 536 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PCGF3Q3KNV8 242 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ADGRF1Q5T601 910 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MZT2AQ6P582 158 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 THAP5Q7Z6K1 395 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CCNYQ8ND76 341 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PNMA1Q8ND90 353 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ATL1Q8WXF7 558 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SYMPKQ92797 1274 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SLC10A4Q96EP9 437 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 C1orf74Q96LT6 269 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ESYT1Q9BSJ8 1104 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 Q9H521 79 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 USP20Q9Y2K6 914 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 WNK2Q9Y3S1 2297 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FAM149AA5PLN7 773 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ST8SIA5O15466 376 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SSNA1O43805 119 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CDC123O75794 336 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ACSL3O95573 720 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FHP07954 510 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SMARCB1Q12824 385 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TRIM65Q6PJ69 517 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 KLHL24Q6TFL4 600 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GPR149Q86SP6 731 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 IFT20Q8IY31 132 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SYTL5Q8TDW5 730 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SYTL4Q96C24 671 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TRAPPC9Q96Q05 1148 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NOC4LQ9BVI4 516 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 OPA3Q9H6K4 179 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SYBUQ9NX95 663 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SBNO1A3KN83 1393 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TNCP24821 2201 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ITGB3P05106 788 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MMP2P08253 660 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NR2F2P24468 414 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ADH7P40394 386 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ARF5P84085 180 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FOXK1P85037 733 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FAM69CQ0P6D2 419 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 POU4F2Q12837 409 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 QPCTQ16769 361 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 INSCQ1MX18 579 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ANKRD26P1Q6NSI1 321 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 BHLHB9Q6PI77 547 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MAEAQ7L5Y9 396 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 RBM23Q86U06 439 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ANKRD52Q8NB46 1076 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ATAD1Q8NBU5 361 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PPP2R3CQ969Q6 453 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 DBNDD2Q9BQY9 259 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MENTQ9BUN1 341 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MAN1C1Q9NR34 630 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SNCAIPQ9Y6H5 919 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 APC2O95996 2303 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MYO3BQ8WXR4 1341 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ALG1L2C9J202 215 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 HSPA12AO43301 675 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NDUFS3O75489 264 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CD2BP2O95400 341 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TOP3BO95985 862 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MT-ATP6P00846 226 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TNNC2P02585 160 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MPOP05164 745 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms