RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 BCAS4Q8TDM0 211 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 UROC1Q96N76 676 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ECSITQ9BQ95 431 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 THTPAQ9BU02 230 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 TMEM8AQ9HCN3 771 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ARHGEF3Q9NR81 526 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 APODP05090 189 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 NAMPTP43490 491 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ACAP2Q15057 778 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 AMHR2Q16671 573 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 C16orf89Q6UX73 402 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SMARCD1Q96GM5 515 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 BBS2Q9BXC9 721 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SPATC1LQ9H0A9 340 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 POLR1BQ9H9Y6 1135 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 TMEM260Q9NX78 707 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SCN3BQ9NY72 215 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 HCN3Q9P1Z3 774 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 TRPC4Q9UBN4 977 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 DRG1Q9Y295 367 aaKnown RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 DAGLAQ9Y4D2 1042 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 OR10H2O60403 315 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 NR1D1P20393 614 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ADORA2AP29274 412 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 IGFALSP35858 605 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 PTGER2P43116 358 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF543Q08ER8 600 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CYP51A1Q16850 503 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 HCAR2Q8TDS4 363 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 NIF3L1Q9GZT8 377 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ZCWPW1Q9H0M4 648 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 GPSM3Q9Y4H4 160 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 TRPV2Q9Y5S1 764 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 H7C0S8 307 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SPAG6O75602 509 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CD2BP2O95400 341 aaKnown RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 VTNP04004 478 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ALDH9A1P49189 494 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RPP38P78345 283 aaKnown RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CAMK1Q14012 370 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ARHGAP17Q68EM7 881 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 C16orf86Q6ZW13 317 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 NEK10Q6ZWH5 1172 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ANO5Q75V66 913 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 NRSN1Q8IZ57 195 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 HASPINQ8TF76 798 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RIT1Q92963 219 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SH3GL1Q99961 368 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 TTLL2Q9BWV7 592 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ANTXR1Q9H6X2 564 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RAB6BQ9NRW1 208 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RRN3Q9NYV6 651 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF232Q9UNY5 417 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SMAPO00193 183 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CACNB4O00305 520 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 PDXKO00764 312 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ASGR1P07306 291 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CCR1P32246 355 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CASP6P55212 293 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RGS1Q08116 209 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SPIDRQ14159 915 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 XKR4Q5GH76 650 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RESP18Q5W5W9 173 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 IQSEC1Q6DN90 963 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 MACC1Q6ZN28 852 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 C11orf74Q86VG3 221 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 PALB2Q86YC2 1186 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 KLHL23Q8NBE8 558 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CMTM5Q96DZ9 223 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RIT2Q99578 217 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SLC39A8Q9C0K1 460 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CDC23Q9UJX2 597 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 KLHL20Q9Y2M5 609 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ABCC3O15438 1527 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 DISP1Q96F81 1524 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CACNA1FO60840 1977 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 TADA3O75528 432 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SKAP2O75563 359 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CASRP41180 1078 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CYTH1Q15438 398 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 GRIK4Q16099 956 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SERPINA13PQ6UXR4 307 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 RGS9BPQ6ZS82 235 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 DEFB132Q7Z7B7 95 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SLFN11Q7Z7L1 901 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SLC35F6Q8N357 371 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 METTL21AQ8WXB1 218 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PPP1R36Q96LQ0 422 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 ZDHHC15Q96MV8 337 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 QRFPRQ96P65 431 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 CYTH2Q99418 400 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 PPCSQ9HAB8 311 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 BIRC5O15392 142 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 RXRGP48443 463 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 BTKQ06187 659 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 STX4Q12846 297 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 MAP2K5Q13163 448 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 SLC25A24Q6NUK1 477 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 LINC00116Q8NCU8 138 aa6.32□□□□□ -1.4
SCN1A-217ENST00000637988 HIPK4Q8NE63 616 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms