RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SMPD4Q9NXE4 827 aa20.31■□□□□ 0.84
CLN3-260ENST00000637578 USP3Q9Y6I4 520 aa20.31■□□□□ 0.84
CLN3-260ENST00000637578 LILRB5O75023 590 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 NFATC1O95644 943 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 TBXAS1P24557 533 aaPredicted RBP20.3■□□□□ 0.84
CLN3-260ENST00000637578 CXCL12P48061 93 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 GRSF1Q12849 480 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-260ENST00000637578 NR1H3Q13133 447 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 TSSK4Q6SA08 328 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 TTC16Q8NEE8 873 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 CYLDQ9NQC7 956 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 CFAP97Q9P2B7 532 aa20.3■□□□□ 0.84
CLN3-260ENST00000637578 E2F8A0AVK6 867 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 SLC9A3R1O14745 358 aaPredicted RBP20.29■□□□□ 0.84
CLN3-260ENST00000637578 ACO1P21399 889 aaKnown RBP20.29■□□□□ 0.84
CLN3-260ENST00000637578 YWHAEP62258 255 aaKnown RBP20.29■□□□□ 0.84
CLN3-260ENST00000637578 SATB1Q01826 763 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 GAB4Q2WGN9 574 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 CT47A1Q5JQC4 288 aaPredicted RBP20.29■□□□□ 0.84
CLN3-260ENST00000637578 ZNF276Q8N554 614 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 ANKRD52Q8NB46 1076 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 P2RY13Q9BPV8 354 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 FUCA2Q9BTY2 467 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 OSER1Q9NX31 292 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 RIF1Q5UIP0 2472 aaKnown RBP20.29■□□□□ 0.84
CLN3-260ENST00000637578 CYP26A1O43174 497 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 TLR5O60602 858 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 LMNAP02545 664 aaKnown RBP20.29■□□□□ 0.84
CLN3-260ENST00000637578 CCDC192P0DO97 292 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 DRD1P21728 446 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 KCNH2Q12809 1159 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 PPP2R5DQ14738 602 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 RAB41Q5JT25 222 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 NAIF1Q69YI7 327 aaPredicted RBP20.29■□□□□ 0.84
CLN3-260ENST00000637578 CCDC186Q7Z3E2 898 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 TBC1D14Q9P2M4 693 aa20.29■□□□□ 0.84
CLN3-260ENST00000637578 FGFR1OPO95684 399 aaKnown RBP20.28■□□□□ 0.84
CLN3-260ENST00000637578 NRLP54845 237 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 CETN1Q12798 172 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 LRMPQ12912 555 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 KLHDC10Q6PID8 442 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 CD101Q93033 1021 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 EXOC4Q96A65 974 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 JAKMIP2Q96AA8 810 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 NT5C1BQ96P26 610 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 NMUR1Q9HB89 426 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 C2orf42Q9NWW7 574 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 KIAA1257Q9ULG3 409 aa20.28■□□□□ 0.84
CLN3-260ENST00000637578 K7ESF4 209 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 GREM1O60565 184 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 EGFP01133 1207 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 CYP17A1P05093 508 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 HOXA6P31267 233 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 FBXO43Q4G163 708 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 ANO6Q4KMQ2 910 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 SCD5Q86SK9 330 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 TTC30AQ86WT1 665 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 SUMF1Q8NBK3 374 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 EHBP1Q8NDI1 1231 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 ATRIPQ8WXE1 791 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 EZH1Q92800 747 aaPredicted RBP20.27■□□□□ 0.84
CLN3-260ENST00000637578 OTUB2Q96DC9 234 aa20.27■□□□□ 0.84
CLN3-260ENST00000637578 KLF16Q9BXK1 252 aaPredicted RBP20.27■□□□□ 0.84
CLN3-260ENST00000637578 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.27■□□□□ 0.84
CLN3-260ENST00000637578 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.27■□□□□ 0.84
CLN3-260ENST00000637578 MYH10P35580 1976 aa20.27■□□□□ 0.83
CLN3-260ENST00000637578 PTPRZ1P23471 2315 aaPredicted RBP20.27■□□□□ 0.83
CLN3-260ENST00000637578 CHURC1-FNTBB4DL54 471 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 TBX18O95935 607 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 AFPP02771 609 aaKnown RBP20.26■□□□□ 0.83
CLN3-260ENST00000637578 OPRD1P41143 372 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 PSEN1P49768 467 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 GCNT1Q02742 428 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 DHCR24Q15392 516 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 RHBDF2Q6PJF5 856 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 PIGZQ86VD9 579 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 CLIC5Q9NZA1 410 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 FAM186AA6NE01 2351 aa20.26■□□□□ 0.83
CLN3-260ENST00000637578 A0A1W2PQH9 124 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 PAEPP09466 180 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 VDRP11473 427 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 ATP5C1P36542 298 aaKnown RBP20.25■□□□□ 0.83
CLN3-260ENST00000637578 TPD52L1Q16890 204 aaPredicted RBP20.25■□□□□ 0.83
CLN3-260ENST00000637578 SGO2Q562F6 1265 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 PKN3Q6P5Z2 889 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 WBP2Q969T9 261 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 TSPAN16Q9UKR8 245 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 O00370 1275 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 RARGP13631 454 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 PKDCCQ504Y2 493 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 HTR3DQ70Z44 454 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 IRF2BP1Q8IU81 584 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 PPM1KQ8N3J5 372 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 ENOX1Q8TC92 643 aaKnown RBP20.25■□□□□ 0.83
CLN3-260ENST00000637578 KAT5Q92993 513 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 EPC1Q9H2F5 836 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 SH3BP1Q9Y3L3 701 aa20.25■□□□□ 0.83
CLN3-260ENST00000637578 RNF225M0QZC1 329 aaPredicted RBP20.24■□□□□ 0.83
CLN3-260ENST00000637578 SCAMP3O14828 347 aaKnown RBP20.24■□□□□ 0.83
CLN3-260ENST00000637578 XPO1O14980 1071 aaKnown RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms